PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_01990.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | MYB | ||||||||
Protein Properties | Length: 328aa MW: 37420.7 Da PI: 7.307 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.9 | 8.6e-17 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l+ +++q G+g +W t ++++g++R++k+c++rw++yl Sme2.5_01990.1_g00003.1 14 RGPWSPEEDSKLKSYIEQNGTGgNWITLPQKVGLKRCGKSCRLRWLNYL 62 89*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 38.9 | 2e-12 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T eEd ++ + G++ W+ Ia+ ++ gRt++++k++w++ Sme2.5_01990.1_g00003.1 69 GEFTDEEDNIICTLYMSIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 78*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.04 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.1E-26 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.3E-12 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.9E-15 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.2E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.27E-8 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 21.842 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 5.1E-12 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.6E-11 | 69 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.89E-8 | 70 | 111 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.0E-24 | 70 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MGRAPCCDKA NVKRGPWSPE EDSKLKSYIE QNGTGGNWIT LPQKVGLKRC GKSCRLRWLN 60 YLRPNIKHGE FTDEEDNIIC TLYMSIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLLC 120 NKQRKDHRPR TGHINHNKLE MMKEHEDFFT THQIINNTYS WPSQQVLFST LIAPQNHDLA 180 ESSSANSHNF QYSNTDQVYF SQDQLSQISS NNQLASMNLA NGNTCNSPVM ISNGYYPSNG 240 VMQEYNNYVS IGLDHDAVNS TSTTHSQQVD HKSVMEMVNS STISTTSQDQ STGWEELSPL 300 VNYPPSVFET VSPYYVFEEP KYLGLLKQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-23 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 0.0 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. | |||
GenBank | HG975514 | 0.0 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006363795.1 | 0.0 | PREDICTED: transcription factor RAX3 | ||||
TrEMBL | M1BXE9 | 0.0 | M1BXE9_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400055148 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49690.1 | 6e-81 | myb domain protein 84 |