PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_01937.1_g00009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 261aa MW: 29121.7 Da PI: 7.7848 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.7 | 2e-18 | 116 | 170 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk+q Lee F+ +++++ +++++LA++l+L rqV vWFqNrRa+ k Sme2.5_01937.1_g00009.1 116 RKKLRLTKTQSALLEESFKIHSTLNPKQKQDLARELNLRPRQVEVWFQNRRARTK 170 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 124.2 | 6e-40 | 116 | 205 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 +kk+rl+k q++lLEesF+ +++L+p++K++lareL+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +e Sme2.5_01937.1_g00009.1 116 RKKLRLTKTQSALLEESFKIHSTLNPKQKQDLARELNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLHKELQE 201 69************************************************************************************ PP HD-ZIP_I/II 87 Lreel 91 L+ +l Sme2.5_01937.1_g00009.1 202 LK-AL 205 *9.44 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.21E-18 | 103 | 173 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.7E-17 | 106 | 166 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.491 | 112 | 172 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.5E-15 | 114 | 176 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.36E-16 | 116 | 173 | No hit | No description |
Pfam | PF00046 | 6.7E-16 | 116 | 170 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 147 | 170 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 9.8E-11 | 172 | 206 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 9.2E-25 | 172 | 215 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MGFDDICNTG LVLGLGFSST ADHKSSRKIT KGPSLGFEPS LTLSLISGDG TYEQPPIKDH 60 HEPADLYRQD SGGASSYSNA SVKRERDVGS EETTTEVERV SSRVISDEDD DGSNSRKKLR 120 LTKTQSALLE ESFKIHSTLN PKQKQDLARE LNLRPRQVEV WFQNRRARTK LKQTEVDCEF 180 LKKCCETLTD ENRRLHKELQ ELKALKIAQP LYMQLPAATL TMCPSCERIG GGVGENQSKN 240 AFTIAQKPHF FSPFNNPSAA C |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 114 | 120 | SRKKLRL |
2 | 164 | 172 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00477 | DAP | Transfer from AT4G37790 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU998972 | 0.0 | EU998972.1 Capsicum annuum homeodomain leucine-zipper 1 (HB1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006363789.1 | 1e-165 | PREDICTED: homeobox-leucine zipper protein HAT22-like | ||||
Swissprot | P46604 | 1e-96 | HAT22_ARATH; Homeobox-leucine zipper protein HAT22 | ||||
TrEMBL | A0A0V0HTW9 | 1e-164 | A0A0V0HTW9_SOLCH; Putative homeobox-leucine zipper protein HAT22-like | ||||
TrEMBL | M1BXI9 | 1e-164 | M1BXI9_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400055199 | 1e-165 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA290 | 24 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 1e-96 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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