PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01860.1_g00006.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family RAV
Protein Properties Length: 349aa    MW: 40477.1 Da    PI: 5.6489
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01860.1_g00006.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.25.3e-104795155
                      AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                             s++kGV     +g W A+I+       + +r++lg+f t+ eAa a++ a+ +l g
  Sme2.5_01860.1_g00006.1 47 SRFKGVV-GQHNGHWGAQIYA------NhQRIWLGTFKTEMEAAMAYDSAAIRLLG 95
                             6899996.4448******999......44**********77************987 PP
2B391.46.7e-29171254185
                              EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                              f+k+ltpsdv+k++rlv+pkk+a+++  +    ++ +++++d+s r W+++++y+k+s+++v+tkGW++Fvk++gL+++D+v F l
  Sme2.5_01860.1_g00006.1 171 FQKELTPSDVGKLNRLVIPKKYATKYfpQ---IQDEEMIFYDTSKRLWKFRYCYWKSSQSFVFTKGWNRFVKDKGLRAKDTVAFNL 253
                              99************************633...35668***********************************************97 PP

                              - CS
                       B3  85 d 85 
                               
  Sme2.5_01860.1_g00006.1 254 C 254
                              5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.24E-124798IPR016177DNA-binding domain
PfamPF008474.2E-54795IPR001471AP2/ERF domain
CDDcd000188.84E-2047106No hitNo description
PROSITE profilePS5103215.68548104IPR001471AP2/ERF domain
SMARTSM003801.2E-1548115IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-154897IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.104.9E-32168253IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.37E-27169256IPR015300DNA-binding pseudobarrel domain
CDDcd100173.41E-27170253No hitNo description
SMARTSM010192.1E-21171275IPR003340B3 DNA binding domain
PfamPF023626.2E-26171254IPR003340B3 DNA binding domain
PROSITE profilePS5086314.41171275IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MEDETNLISS TTTYLTVGDC DSSASNHLLP KKRNFHAREG KTCIPGSRFK GVVGQHNGHW  60
GAQIYANHQR IWLGTFKTEM EAAMAYDSAA IRLLGQDHSH RNLAWTNSTI QEPNFQTQFS  120
TEDILRMIKE GSYTSKFDEY LKEKFEDHFQ SLENLQTVAK GNAEFSYKQL FQKELTPSDV  180
GKLNRLVIPK KYATKYFPQI QDEEMIFYDT SKRLWKFRYC YWKSSQSFVF TKGWNRFVKD  240
KGLRAKDTVA FNLCEFKNGT KENCNAFVID VVKNTEVLSI NLALNHEETS NEHEMETQEF  300
RKAQPYDDDD DDNNNNDEGE DDDDASLVPV WLFGKQIGWT EAKKAMEFK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A4e-2817025213101DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754421e-176HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006350629.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
SwissprotQ9C6884e-82RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLK4BI870.0K4BI87_SOLLC; Uncharacterized protein
STRINGSolyc03g083110.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52522339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-84RAV family protein