PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01689.1_g00004.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 332aa    MW: 36600.1 Da    PI: 4.9361
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01689.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.83.4e-31154212259
                              --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                              +D ++WrKYGqK++kgs++pr+YYrC+++ gC ++k+ver+++dp+++++tY+ eHnh+
  Sme2.5_01689.1_g00004.1 154 SDMWSWRKYGQKPIKGSPYPRGYYRCSTSkGCLARKQVERNRSDPNMFIVTYTAEHNHP 212
                              79************************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.0E-31146214IPR003657WRKY domain
PROSITE profilePS5081135.026148214IPR003657WRKY domain
SuperFamilySSF1182908.24E-27151214IPR003657WRKY domain
SMARTSM007743.7E-37153213IPR003657WRKY domain
PfamPF031063.9E-26155212IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MEEDWDLHAV VRGCAASSTA AATSTTTTTS TAAATNSCCN FQPRQDGNFF NFQDPFVPRF  60
DNPTTDFEEL HNLYKPFFPK SQQIPLSPQN NNNNIPISPL SVLGGLQDLS PQQTLKQQQH  120
IHQLNSTRPT QPKQSPLKNQ LKKVCQVPAE GLSSDMWSWR KYGQKPIKGS PYPRGYYRCS  180
TSKGCLARKQ VERNRSDPNM FIVTYTAEHN HPMPTHRNSL AGSTRQKPAN SEAGTVSDSN  240
KPSSSSPVSS PATEKQESSR EEKEDIFEDD DDEFGSSNMG LDNMEPADDD FFEGLDELAA  300
QATGDCFSDN FPGSMQLTWL SNNATTTAAG GV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-23138215280Disease resistance protein RRS1
5w3x_D4e-23138215280Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755131e-178HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006339631.10.0PREDICTED: WRKY transcription factor 22
TrEMBLM0ZGA40.0M0ZGA4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000002150.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25912457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.13e-64WRKY family protein