PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_01620.1_g00006.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

LBD

Protein Properties

Length: 304aa MW: 34116.2 Da PI: 6.989

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_01620.1_g00006.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	137.1	6.5e-43	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +CaaCk+lrrkC+++Cv+apyfp +qp+kf nvhk+FGasnv+kll++l++ +reda++sl+yeAe r+rdPvyG+vg+i+ lq++ Sme2.5_01620.1_g00006.1 7 PCAACKFLRRKCTQECVFAPYFPPDQPQKFGNVHKVFGASNVSKLLNELNPAQREDAVNSLAYEAEYRLRDPVYGCVGLISLLQHR 92 7*********************************************************************************** PP DUF260 87 leqlkaelallkee 100 l+ql+ +l ++k+e Sme2.5_01620.1_g00006.1 93 LRQLQDDLLTAKKE 106 *****9998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.936	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.7E-42	7	104	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MSSTNSPCAA CKFLRRKCTQ ECVFAPYFPP DQPQKFGNVH KVFGASNVSK LLNELNPAQR 60 EDAVNSLAYE AEYRLRDPVY GCVGLISLLQ HRLRQLQDDL LTAKKELTTY IGPSAMLPMN 120 LQPPEFLQQQ HHMNAPSSST MMPFNMSAMS GMPTGNIAHG GQLIIRDPQQ QSIEAQQYIA 180 AMEQRDQHEM LRNYDQQQQQ QQPPSQQQDV VRFNSGFDST SSVTATGFHQ ISSSTSPSLV 240 LAGTFENPYN LFPAQQAQQD HSHPHHQQIP LQPQQHHPLQ QPETPRQQQR AKSVEEGRSA 300 GPSC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-50	3	110	7	114	LOB family transfactor Ramosa2.1
5ly0_B	5e-50	3	110	7	114	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004232054.1	1e-133	LOB domain-containing protein 36-like
Refseq	XP_010316156.1	1e-133	LOB domain-containing protein 36-like
Swissprot	Q9FKZ3	8e-81	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	A0A314L3T6	1e-131	A0A314L3T6_NICAT; Lob domain-containing protein 36
TrEMBL	M1AME7	1e-131	M1AME7_SOLTU; Uncharacterized protein
STRING	Solyc02g090410.2.1	1e-133	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	1e-71	ASYMMETRIC LEAVES 2-like 1

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]