PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_01601.1_g00006.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

G2-like

Protein Properties

Length: 297aa MW: 34275.4 Da PI: 7.0586

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_01601.1_g00006.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	83.9	1.7e-26	19	83	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGse...........kAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++Fv+a+e+LGG++ +AtPk +l++m+v gLt++hvkSHLQ+YR+ Sme2.5_01601.1_g00006.1 19 PRLRWTPDLHHCFVHAIEKLGGQDilnpffgnicvEATPKLVLQMMDVRGLTISHVKSHLQMYRS 83 8*******************98666666666667**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.9E-29	15	86	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.97E-12	17	85	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.5E-18	19	84	IPR006447	Myb domain, plants
Pfam	PF00249	6.6E-8	20	82	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MGNCGRNGGV RQYIRSKVPR LRWTPDLHHC FVHAIEKLGG QDILNPFFGN ICVEATPKLV 60 LQMMDVRGLT ISHVKSHLQM YRSMKSDVNK QERMGIQPRK QQSLEDLDCH YQQQEQEEGC 120 VVEQQKLLVY QYPSFSSNHN MEISDCTPYF NSVQPTKRAR IERCSSQRKL EAVTNQYNSR 180 NDYIHSIMAE KNEIQESQFL KVLKTQDSSN RFKFEGLRKT ENVREEEEED EDEHGLSLSL 240 SLHHHPSTQR SNASSIISEI SETISSSSGG SNLNHHQYHW LSLSEKQNVN LNLSIAL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-14	20	85	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-14	20	85	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-14	20	85	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-14	20	85	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-14	20	85	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-14	20	85	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-14	20	85	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-14	20	85	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975443	3e-61	HG975443.1 Solanum pennellii chromosome ch04, complete genome.
GenBank	HG975516	3e-61	HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015072961.1	1e-149	putative Myb family transcription factor At1g14600
TrEMBL	M1CVL1	1e-144	M1CVL1_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400075668	1e-145	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5433	22	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02060.1	5e-31	G2-like family protein