PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01585.1_g00006.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 499aa    MW: 55488.7 Da    PI: 7.8474
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01585.1_g00006.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.51.3e-33171228260
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                              dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers  d++++ei+Y+g+Hnh+k
  Sme2.5_01585.1_g00006.1 171 DDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSL-DGQITEIVYKGNHNHPK 228
                              8****************************************.***************85 PP
2WRKY105.92.1e-33341399159
                              ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              ldDgy+WrKYGqK+vkg+++prsYY+Cts+gCpv+k+ver+++d + v++tYeg+Hnh+
  Sme2.5_01585.1_g00006.1 341 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSTGCPVRKHVERASQDIRSVITTYEGKHNHD 399
                              59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-28162229IPR003657WRKY domain
PROSITE profilePS5081124.088165229IPR003657WRKY domain
SuperFamilySSF1182902.22E-25166229IPR003657WRKY domain
SMARTSM007749.2E-37170228IPR003657WRKY domain
PfamPF031061.0E-25171227IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.7E-37326401IPR003657WRKY domain
SuperFamilySSF1182905.36E-29333401IPR003657WRKY domain
PROSITE profilePS5081138.629336401IPR003657WRKY domain
SMARTSM007743.0E-38341400IPR003657WRKY domain
PfamPF031061.0E-25342399IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MAASSFSFPT SSSFMNTSFT DLLASDDYPT KGLADRIAER TGSGVPKFKS LPPPSLPLSP  60
PPFSPSSYFA IPPGLSPTEL LDSPVLLSSS NLLPSPTTGT FPAQAFNWKS SSHQHVKQED  120
KNCSDFSFQT QVGTAASISQ SQTNHVSLNN NNQNNSGNQY NQCIREQKRS DDGYNWRKYG  180
QKQVKGSENP RSYYKCTYPN CPTKKKVERS LDGQITEIVY KGNHNHPKPQ STRRSSSSTA  240
SSAIQSYNTQ TNEIPDHQSY GSQMDSVATP ENSSISFGDD DHEHTSQKSS RSRGDDLDEE  300
EPDSKRWKRE SESEGLSVLG GSRTVREPRV VVQTTSDIDI LDDGYRWRKY GQKVVKGNPN  360
PRSYYKCTST GCPVRKHVER ASQDIRSVIT TYEGKHNHDV PAARGSGNHS INRPVVPTIR  420
PSVTSHQSNY QVPLQSIRPQ QSEMGAPFTL EMLQKPNDYG FSGYANSEDS YGNQVQDNNV  480
FSRAKNEPRD DMFMESLLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-36154402178Probable WRKY transcription factor 4
2lex_A2e-36154402178Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1928840.0AB192884.2 Solanum tuberosum PPS8 mRNA for double WRKY type transfactor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001311944.10.0probable WRKY transcription factor 25
SwissprotQ6B6R41e-138WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A1U8H1Q50.0A0A1U8H1Q5_CAPAN; Uncharacterized protein
TrEMBLA0A2G2ZAP80.0A0A2G2ZAP8_CAPAN; probable WRKY transcription factor 25
STRINGSolyc06g066370.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22862460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-109WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]