PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01363.1_g00005.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 159aa    MW: 17877.1 Da    PI: 8.2547
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01363.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY33.96.4e-11138159122
                              ---SS-EEEEEEE--TT-SS-E CS
                     WRKY   1 ldDgynWrKYGqKevkgsefpr 22 
                              ldDg++WrKYGqK vk+s++pr
  Sme2.5_01363.1_g00005.1 138 LDDGFKWRKYGQKAVKNSTHPR 159
                              59*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-11125159IPR003657WRKY domain
SuperFamilySSF1182905.1E-9130159IPR003657WRKY domain
PROSITE profilePS5081112.782133159IPR003657WRKY domain
PfamPF031066.7E-7139159IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MDSGEEPPPA PPPPLPPQPP TLLSPANFFM QQPNDQLPMQ NNCNANQLGL IGDNIDWGGL  60
LSGPTINNNN ESIATTSNVS INPRNMNVNV MEGGEQHQQQ LQLQLQEHHN LCRKEKGRKR  120
KYVPPRIAFH TRSTEDILDD GFKWRKYGQK AVKNSTHPR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755201e-121HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016552679.17e-64PREDICTED: probable WRKY transcription factor 75
TrEMBLA0A2G3DAQ65e-66A0A2G3DAQ6_CAPCH; Putative WRKY transcription factor 56
STRINGSolyc08g081630.1.17e-53(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63742433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64000.14e-17WRKY DNA-binding protein 56