PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01333.1_g00005.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 456aa    MW: 49564 Da    PI: 10.0612
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01333.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.17.5e-122351448
                             HHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding 14 davkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             ++vk++G++ W++I++ ++ +R++k+c++rw ++l
  Sme2.5_01333.1_g00005.1  2 KLVKEHGTKGWSLISKSIP-NRSGKSCRNRWCNHL 35
                             79*****************.*************96 PP
2Myb_DNA-binding53.74.9e-174385347
                             SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                             ++T+eEde +++a+++lG+  W  Iar ++ gR+++ +k++w++ 
  Sme2.5_01333.1_g00005.1 43 PFTPEEDETIIKAHAKLGNQ-WVVIARLLP-GRSDNAIKNHWNST 85
                             89****************99.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.407135IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.8E-19142IPR009057Homeodomain-like
PfamPF002493.7E-11235IPR001005SANT/Myb domain
SMARTSM007170.016237IPR001005SANT/Myb domain
CDDcd001671.37E-9235No hitNo description
SuperFamilySSF466891.46E-261491IPR009057Homeodomain-like
PROSITE profilePS5129425.1763690IPR017930Myb domain
SMARTSM007177.5E-164088IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-234389IPR009057Homeodomain-like
PfamPF002499.4E-154385IPR001005SANT/Myb domain
CDDcd001671.72E-124386No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MKLVKEHGTK GWSLISKSIP NRSGKSCRNR WCNHLNPEVE HRPFTPEEDE TIIKAHAKLG  60
NQWVVIARLL PGRSDNAIKN HWNSTLKRKC PFTENSQPPL KRLFSIEAGI NSGGPYRSDF  120
NDLGVSRFPQ VSLYPSISLD RVSPLSTFSS VNPNSMSLNG SNLRNLNLSR LPRPTAPRGK  180
FFSSSLVSPI MPYSSTSLGP YRPDLSNLGL SKFTHVSHYP SNDPLDRVSP LSAFSPVNPN  240
LKSPNESNLS NLNLSRLLQL SLYPPTAPQG EFFPTLSVSP VMPNSSTSLG PYGSDLSNLG  300
LSKFPQVSHY PFNDPLDRVS SLSAFSPVNS NSMSSNGSNL SNLNLSRLPQ LSIYPPTAPQ  360
GEIFPPSSVS PIQPNSSTSL GPYRLDLGNL GLSKFLQGSH YPSIAPPDEI LPLSSVPPVM  420
PDPSTSLSLA LPGFRASMNT EAKRDAIVNN IGASKD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-3618919107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015159282.12e-63PREDICTED: transcriptional activator Myb-like
TrEMBLM1DVY74e-64M1DVY7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000952877e-65(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1637334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.19e-47myb domain protein 73