PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_01218.1_g00001.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

Protein Properties

Length: 267aa MW: 30409.7 Da PI: 8.622

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_01218.1_g00001.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	49.7	6.8e-16	35	120	1	94
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f k +++s+v+ +l+lp+ f++ h+ ++ ++t++l de+ ++++ k+ ++++ l++GW++F a++L egD++vF+l + Sme2.5_01218.1_g00001.1 35 FMKPMIRSNVSGGFWLSLPRLFCQLHM--PRHDITVILVDERQEEYKTKYLAERNG----LSGGWRGFSLAHDLVEGDVLVFQLFR 114 89*******************9997..56889************555555....9********************865 PP SSEE..EE CS B3 87 rsefelvv 94 + +v Sme2.5_01218.1_g00001.1 115 FCKL--KV 120 3333..44 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	4.3E-18	27	126	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.24E-21	30	126	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.39E-23	33	124	No hit	No description
PROSITE profile	PS50863	11.688	35	126	IPR003340	B3 DNA binding domain
SMART	SM01019	8.9E-18	35	126	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.7E-13	35	123	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MAMMHNLYGQ IDSATSAKYR AEEVQSRLST KYPSFMKPMI RSNVSGGFWL SLPRLFCQLH 60 MPRHDITVIL VDERQEEYKT KYLAERNGLS GGWRGFSLAH DLVEGDVLVF QLFRFCKLKV 120 YMVRANYLAE VDAALVLLHL DAHRKQIDPV HQMQDNRSMK QVGIKRQRPS SQEGDDYSSE 180 NMSHKHSHPR NTFKELELLP SKGLAYETVS IVDAVKASKL NDPPNGTFSS WNTRPTELEQ 240 LEISPFSGGY SVQPALTLSG AEMVFRP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	4e-79	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004230781.1	1e-179	B3 domain-containing protein At5g42700
Refseq	XP_006346414.1	1e-179	PREDICTED: B3 domain-containing protein At5g42700-like isoform X1
Refseq	XP_006346415.1	1e-179	PREDICTED: B3 domain-containing protein At5g42700-like isoform X1
Refseq	XP_010315232.1	1e-179	B3 domain-containing protein At5g42700
Refseq	XP_015163758.1	1e-179	PREDICTED: B3 domain-containing protein At5g42700-like isoform X1
Refseq	XP_015163759.1	1e-179	PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X2
TrEMBL	A0A3Q7ESM6	1e-177	A0A3Q7ESM6_SOLLC; Uncharacterized protein
TrEMBL	M1CFC6	1e-177	M1CFC6_SOLTU; Uncharacterized protein
STRING	Solyc01g108120.2.1	1e-178	(Solanum lycopersicum)
STRING	PGSC0003DMT400066312	1e-178	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13184	12	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	2e-44	B3 family protein