PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_01196.1_g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | STAT | ||||||||
Protein Properties | Length: 1201aa MW: 135151 Da PI: 6.7517 | ||||||||
Description | STAT family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | STAT | 155.7 | 1.2e-48 | 408 | 542 | 1 | 120 |
STAT 1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisq............. 73 ldv+l++ +++p++ + evva+L+y+d+g++vek+ da+a LL+sydG+e++s+drp+k++ Grasfklkisq Sme2.5_01196.1_g00006.1 408 LDVTLMDNFSRPMTEEAEVVATLVYSDDGTPVEKPVDADAALLTSYDGIEYASSDRPSKVISGRASFKLKISQrilalekkidlls 493 89*********************************************************************955544444444444 PP STAT 74 ..LsskcdnrLfrikfeipklkkypfleavskpirCisrsrntrssslt 120 Lsskc+nrLfri+f+ipkl kypfle++s+pirCisr+r+tr++sl+ Sme2.5_01196.1_g00006.1 494 qqLSSKCENRLFRIRFDIPKLGKYPFLEVFSRPIRCISRNRSTRATSLM 542 449*****************************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.170.150.20 | 4.0E-53 | 73 | 191 | IPR002579 | Peptide methionine sulphoxide reductase MrsB |
SuperFamily | SSF51316 | 1.62E-52 | 76 | 192 | IPR011057 | Mss4-like |
TIGRFAMs | TIGR00357 | 1.8E-50 | 77 | 192 | IPR002579 | Peptide methionine sulphoxide reductase MrsB |
Pfam | PF01641 | 9.5E-48 | 80 | 191 | IPR002579 | Peptide methionine sulphoxide reductase MrsB |
SuperFamily | SSF49899 | 2.6E-8 | 213 | 329 | IPR013320 | Concanavalin A-like lectin/glucanase domain |
Pfam | PF13385 | 1.7E-6 | 217 | 350 | No hit | No description |
Gene3D | G3DSA:3.30.505.10 | 3.3E-4 | 812 | 877 | IPR000980 | SH2 domain |
SuperFamily | SSF55550 | 2.84E-5 | 813 | 877 | IPR000980 | SH2 domain |
PROSITE profile | PS50001 | 8.684 | 815 | 904 | IPR000980 | SH2 domain |
Gene3D | G3DSA:3.30.200.20 | 3.4E-19 | 905 | 998 | No hit | No description |
SuperFamily | SSF56112 | 7.24E-76 | 909 | 1195 | IPR011009 | Protein kinase-like domain |
PROSITE profile | PS50011 | 39.976 | 922 | 1197 | IPR000719 | Protein kinase domain |
SMART | SM00220 | 9.0E-32 | 922 | 1195 | IPR000719 | Protein kinase domain |
Pfam | PF00069 | 9.3E-48 | 924 | 1189 | IPR000719 | Protein kinase domain |
PROSITE pattern | PS00107 | 0 | 928 | 950 | IPR017441 | Protein kinase, ATP binding site |
Gene3D | G3DSA:1.10.510.10 | 3.3E-45 | 999 | 1194 | No hit | No description |
PROSITE pattern | PS00108 | 0 | 1044 | 1056 | IPR008271 | Serine/threonine-protein kinase, active site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006468 | Biological Process | protein phosphorylation | ||||
GO:0055114 | Biological Process | oxidation-reduction process | ||||
GO:0004672 | Molecular Function | protein kinase activity | ||||
GO:0005524 | Molecular Function | ATP binding | ||||
GO:0033743 | Molecular Function | peptide-methionine (R)-S-oxide reductase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 1201 aa Download sequence Send to blast |
MSMASSTLPI YSFSSAVNFS SKPQLGFSRK TLSCPTFGGS KNRISVSIRA MGSSASSSSS 60 KSDSAQEASK MDYSSISDEE WKKKLTNEQF YITRQKGTER AFTGEYWNTK TPGTYHCICC 120 DTPLFESSTK FDSGTGWPSY YQPIGNNVKS KMDLSIIFMP RQEVLCAACD AHLGHIFDDG 180 PPPTGKRYCI NRLKRGSMGI QDYSFLRDLQ VEFKEVTNRF SLCFWFYLNE ASTLPSTILY 240 QEHPDVTSHA PFLLLDEKMK ILLFPSLISS HSNITSGREV EHAISACEFP TKKWVHVGCE 300 VTQGLLHLYF DGKIVGEKSL TSSLNNDMGS DNSIISLTCI SGKDSQLDGY VYSSELFPTL 360 STIENHYVKD PPVQLSIDSS SAYEIEEDSD GVWSIVGGKA SCRRNFDLDV TLMDNFSRPM 420 TEEAEVVATL VYSDDGTPVE KPVDADAALL TSYDGIEYAS SDRPSKVISG RASFKLKISQ 480 RILALEKKID LLSQQLSSKC ENRLFRIRFD IPKLGKYPFL EVFSRPIRCI SRNRSTRATS 540 LMLRKSSLGI HLLNGSQSPV VDDGSSDLPC IVREAKQSPS SKRVKLGQEK LCANFKDDFM 600 LKQANGDSRS HSWTSEDNHA HQNSLVARPA SHGGAENFSS DSENSETTIS ATDDLPSNRG 660 PISDMVVFKY CLADLNERRL LLKEMAMTAK EEELATFAER VSLFSGCSHH RHQISMSKRL 720 IEEGIKCWNL ISNDNHHVLW ENLVSGLQEH FLKMTFGRTR SLTHQDFNLL RRVSGCQDLV 780 SQDNFEKLWC WLYPVAFTLS QQCISSLWGS TSPMWIEGFI TMEEAEFSLK NLGTLQEPGT 840 YILRFPTSRS WPHPDAGNLV VTYVGNDYTI HHRLLSLEFI YRWKRNQMVV QDSLSGGKLV 900 MFKSPKMNTM KSNMFLKRTM KLTNKDIIGS GGYGTVYKLT INESISFAVK RLNRISVEQD 960 RGFERELEAM GDIKHRNIVT LHGYYSTTQY NLLIYELMSN GSLDEVLHGK SAARKILDWP 1020 SRYKIALGAA RGLSYLHHDC IPHIIHRDIK SSNILLDHNL EARVSDFGLA TLMEPDKTHV 1080 STLVAGTFGY LAPEYFDTGK ATVKGDVYSF GVVLLELLTG KKPSDEAFLE EGTKLVTWVK 1140 AVVQEKREEY VVDKNLEEFP IDEVNYVFNI ALMCLEEDPC KRLTMAEVVI MLEQIKLNAL 1200 A |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4q5j_A | 3e-76 | 900 | 1196 | 16 | 320 | Protein BRASSINOSTEROID INSENSITIVE 1 |
4q5j_B | 3e-76 | 900 | 1196 | 16 | 320 | Protein BRASSINOSTEROID INSENSITIVE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF144174 | 0.0 | EF144174.1 Capsicum annuum methionine-R-sulfoxide reductase B4 protein (MsrB4) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006348345.1 | 0.0 | PREDICTED: uncharacterized protein LOC102592228 | ||||
TrEMBL | A0A2G2WF35 | 0.0 | A0A2G2WF35_CAPBA; Receptor-like serine/threonine-protein kinase | ||||
STRING | Solyc07g062050.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9394 | 23 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17040.1 | 1e-178 | SH2 domain protein A |