PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_01191.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | Dof | ||||||||
Protein Properties | Length: 290aa MW: 31399 Da PI: 8.9311 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.4 | 7.3e-39 | 62 | 120 | 3 | 61 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++l+cprCds ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknk+ Sme2.5_01191.1_g00002.1 62 AENLRCPRCDSPNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKTI 120 57899***************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 7.0E-24 | 63 | 115 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.0E-32 | 64 | 119 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.385 | 65 | 119 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 67 | 103 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MIQELFAGNS TLIGGGGGGD SNNNNNNISK LSNITPSSSP LSCTTTSTPA AASANASPCA 60 NAENLRCPRC DSPNTKFCYY NNYNLTQPRH FCKTCRRYWT KGGALRNVPI GGGCRKNKTI 120 TTAKSTAAKL KNSLPFELIG KSGIFGGFEQ EIIPSTNNPF LFSSPPHQNH NPILSLLKGN 180 HHNLNFVKEE PKPLNLNSYN QFPSNSGLSS LWKNNYQENI GEVQNNSGFQ ELYQRLKAST 240 NRCYPDIHGP SSLSSSMILD SAPVAGGESG FWNPTLSTWL DLPTANGAYL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006338231.1 | 1e-156 | PREDICTED: dof zinc finger protein DOF3.5-like | ||||
TrEMBL | M1AMF6 | 1e-155 | M1AMF6_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400025984 | 1e-156 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51700.1 | 6e-32 | DOF zinc finger protein 1 |