PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_01183.1_g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | B3 | ||||||||
Protein Properties | Length: 615aa MW: 70978.1 Da PI: 7.7967 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43 | 8e-14 | 17 | 94 | 10 | 98 |
HHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 10 vlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 +k++ l +p f+ ++ g ++++ +tl+ + g++W vkl ++++ l++GW +F+++++L+ gD+++F++dg+ ef v+ Sme2.5_01183.1_g00006.1 17 GFKNS-LKIPDGFL-KYliGREEQG--HVTLK-KAGKKWLVKL--NGQK----LEEGWGQFAEEHDLQLGDMLIFRHDGDLEF--DVS 91 55665.********.6656544434..56655.69********..8888....***********************8886555..888 PP EE- CS B3 96 vfr 98 +f+ Sme2.5_01183.1_g00006.1 92 IFN 94 875 PP | |||||||
2 | B3 | 48.4 | 1.7e-15 | 144 | 223 | 6 | 88 |
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 ++ + l++g l++p+kfa+++g+ + ++ + ++de+ rsW++++ + ++++ ++ W+eF ang+k gD ++F+++ + Sme2.5_01183.1_g00006.1 144 VKRYCLRNGYLRIPNKFAKANGLTN-KECGVFIRDETQRSWNLRI--YTSCSQVYVGGRWREFSAANGIKLGDQIMFEVITDG 223 6788999**************6664.3347***************..77778889999********************88753 PP | |||||||
3 | B3 | 53.9 | 3.2e-17 | 271 | 352 | 4 | 90 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 +++++ l++g l++p kfa+++g++k+++ l+++de+ rsW++kl +++ + ++ W +F+ an++k+gD ++F+++ + + Sme2.5_01183.1_g00006.1 271 CTMKKYFLTNGYLRIPSKFAKANGLNKKCG--LIIRDERQRSWNLKL--YTSRSLVCVGGSWGKFCAANNIKAGDRLMFEVVTN-G 351 5679999*******************9998..999************..77777799999********************8764.3 PP E CS B3 90 f 90 + Sme2.5_01183.1_g00006.1 352 K 352 3 PP | |||||||
4 | B3 | 59.4 | 6.3e-19 | 392 | 482 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 ++++++ ++g l+lpk+fa ++ ++k+++ l+++de+ rsW++++ + + + +++GW eF++an+LkegD vvF+++ + Sme2.5_01183.1_g00006.1 392 CFIRPYSISRGYLRLPKQFAMANcLINKKCG--LIIRDERQRSWNLRI--YTYNSVVHISGGWVEFCNANDLKEGDYVVFEVVA-N 472 678999**************99986666676..999************..66666778999********************887.5 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 ++++ k+++ Sme2.5_01183.1_g00006.1 473 GEKPIWKFHD 482 5556666655 PP | |||||||
5 | B3 | 38.6 | 1.9e-12 | 514 | 595 | 5 | 90 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 +++++ l+ g l+lp+k a ++g++ ++ +l+++de+ rsW++ l r + ++ +++GW +F +a L++gD ++F+++ + ++ Sme2.5_01183.1_g00006.1 514 TIRPYCLTYGYLCLPRKIALRNGLI-GKKCDLIIRDEWQRSWNLIL--RPFGVSVCIRGGWDSFREAYCLDDGDCIMFEVVTD-GE 595 5678999999************887.45569***************..*******************************8764.33 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.0E-18 | 5 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.689 | 7 | 96 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.8E-17 | 7 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.24E-17 | 8 | 94 | No hit | No description |
SMART | SM01019 | 1.7E-15 | 10 | 96 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.4E-10 | 19 | 93 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.04E-15 | 137 | 231 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.6E-15 | 137 | 230 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.505 | 139 | 233 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-8 | 139 | 234 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.4E-13 | 143 | 225 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.60E-13 | 147 | 218 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 6.0E-19 | 263 | 357 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.14E-19 | 264 | 358 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.097 | 268 | 361 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.5E-11 | 269 | 361 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.8E-15 | 272 | 354 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 9.79E-12 | 272 | 346 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 8.1E-19 | 387 | 480 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.65E-19 | 388 | 480 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.465 | 389 | 483 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.1E-15 | 390 | 484 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.0E-17 | 392 | 482 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.19E-13 | 399 | 468 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.7E-12 | 507 | 600 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.33E-14 | 508 | 607 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.361 | 510 | 604 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.1E-10 | 511 | 605 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.6E-10 | 514 | 597 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.26E-9 | 523 | 589 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 615 aa Download sequence Send to blast |
MEAPPVKPHF FKPILPGFKN SLKIPDGFLK YLIGREEQGH VTLKKAGKKW LVKLNGQKLE 60 EGWGQFAEEH DLQLGDMLIF RHDGDLEFDV SIFNLSHCDA EYAEYLQEEE EEEPHTVEET 120 SKNLEFKEAA TDKPFGHSQF ICTVKRYCLR NGYLRIPNKF AKANGLTNKE CGVFIRDETQ 180 RSWNLRIYTS CSQVYVGGRW REFSAANGIK LGDQIMFEVI TDGEQPIWKF HKYAECLQQE 240 EKEAYTFEEP CVKLELEEAA PHNPDKSQFE CTMKKYFLTN GYLRIPSKFA KANGLNKKCG 300 LIIRDERQRS WNLKLYTSRS LVCVGGSWGK FCAANNIKAG DRLMFEVVTN GKKPIWKFHA 360 ITNPSTVGET SENSDFKEVA PHNPIGQSHF ECFIRPYSIS RGYLRLPKQF AMANCLINKK 420 CGLIIRDERQ RSWNLRIYTY NSVVHISGGW VEFCNANDLK EGDYVVFEVV ANGEKPIWKF 480 HDKPNPSVES SRKAFPHVEA ATHKLSHHSR FVCTIRPYCL TYGYLCLPRK IALRNGLIGK 540 KCDLIIRDEW QRSWNLILRP FGVSVCIRGG WDSFREAYCL DDGDCIMFEV VTDGEKPIWK 600 FHGKISEENI SIIEE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP009283 | 9e-79 | AP009283.1 Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0216M19, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015168732.1 | 0.0 | PREDICTED: B3 domain-containing protein REM14-like isoform X4 | ||||
TrEMBL | A0A1U8EZF5 | 0.0 | A0A1U8EZF5_CAPAN; B3 domain-containing protein REM14-like isoform X1 | ||||
STRING | XP_009597618.1 | 1e-173 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA322 | 15 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26680.1 | 1e-54 | B3 family protein |