PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01158.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 585aa    MW: 62121.9 Da    PI: 9.805
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01158.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding248.7e-08203249146
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHH..HHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIar..tmgkgRtlkqcksrwqk 46 
                              r++W++ Ed  l+ av+++G g+W  I +    g  Rt+ q+  rw +
  Sme2.5_01158.1_g00002.1 203 RKPWSAAEDMELIAAVEKFGEGNWVNILKadFKG-DRTASQLSQRWAT 249
                              789************************7621455.9999999999965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.896198255IPR017930Myb domain
SuperFamilySSF466895.31E-13199253IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-13199252IPR009057Homeodomain-like
SMARTSM007171.1E-9202253IPR001005SANT/Myb domain
PfamPF002492.5E-6203249IPR001005SANT/Myb domain
CDDcd116601.50E-14204252No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MVEKRKLNNR VFVTEDDMST LLERYTATTM LTLLQEVAQV EESKIDWNEM VKKTTTGITN  60
AREYQMVWRH LAYRQVLLDK VDDDAQPLDD DSDLENELEA FPPVSSEASA EAAAFVKVFI  120
ASGPLCDSNM SNGNTVEGSL TIDIPNGQTS GTAANSLHGI SAYGSKLRVP VTVQTQPLPS  180
VTAAEGLDTS ERAGANFPPR RKRKPWSAAE DMELIAAVEK FGEGNWVNIL KADFKGDRTA  240
SQLSQRWATI RRRRGNMVGN GSQLSEAQLA ARHAVSMAFG DNLRAAGPIS LNGCGIVSPG  300
PSSGGGPSNS SHFAAADIAS GGSQSKHQQD LVPSKPIIPQ NPLPKPAINP DPMVKAAAMV  360
ASSRIATHSS AAASLPMAAL PKKDVHTMPG GTPAVKSSVP GSFSGLPSNV HFIRTGLVPR  420
PAGPSNASQY GTQQQALRSA SPAFHPKPMT VPSRTNASSG VRRAPSSSPT TMLEVKSEAA  480
VSQENKTAVP YNTRSGKTEG IRAASLAKTP QQQVRKDQTF GAGNLLTEKG QGQELGGESK  540
ASRIRVQEQQ ESPSTKNENT KIELAVEKVG VQGPAPVTCK MFKKG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1198204PRRKRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755161e-153HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004237998.10.0uncharacterized protein LOC101255687
TrEMBLA0A3Q7G9160.0A0A3Q7G916_SOLLC; Uncharacterized protein
STRINGSolyc04g076360.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34342237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.15e-60MYB_related family protein