PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_01155.1_g00012.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | Dof | ||||||||
Protein Properties | Length: 217aa MW: 23346.5 Da PI: 9.2078 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123 | 1e-38 | 16 | 76 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++lkcprCds ntkfCyynny+lsqPr++Ck+CrryWtkGG+lrn+PvGgg+rk+ k+s Sme2.5_01155.1_g00012.1 16 EQEHLKCPRCDSPNTKFCYYNNYNLSQPRHYCKSCRRYWTKGGTLRNIPVGGGSRKSTKRS 76 57899***************************************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-26 | 9 | 68 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 9.3E-33 | 18 | 74 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.863 | 20 | 74 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 22 | 58 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MQDPSIYPQI KPQFPEQEHL KCPRCDSPNT KFCYYNNYNL SQPRHYCKSC RRYWTKGGTL 60 RNIPVGGGSR KSTKRSSSSS KKSSSTTPLT SSATTPLTSS SSSTNPKPEP FSIPAIPSFD 120 VTAGSFSSLL ASTEPQFGNF LEAYPNNNNN GSNLQLGNPI SSSVLDSGSG SGSNSKHQNG 180 NNPYLGVQNG GESNNCWNGG NNGWPDLAIF TPGSNFQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00199 | DAP | Transfer from AT1G51700 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 1e-148 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006343007.1 | 2e-98 | PREDICTED: dof zinc finger protein DOF3.1-like | ||||
Swissprot | O82155 | 5e-42 | DOF17_ARATH; Dof zinc finger protein DOF1.7 | ||||
TrEMBL | M0ZRB2 | 4e-97 | M0ZRB2_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400006421 | 7e-98 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51700.1 | 1e-36 | DOF zinc finger protein 1 |
Publications ? help Back to Top | |||
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