PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01077.1_g00010.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 649aa    MW: 71022.4 Da    PI: 6.9361
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01077.1_g00010.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.94.3e-33227284260
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                              dDgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers+ +++++ei+Y+g Hnh+k
  Sme2.5_01077.1_g00010.1 227 DDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSQ-EGHITEIIYKGAHNHPK 284
                              8****************************************.***************85 PP
2WRKY104.46.3e-33439497159
                              ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+++d k v++tYeg+Hnh+
  Sme2.5_01077.1_g00010.1 439 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCNVRKHVERASHDLKSVITTYEGKHNHD 497
                              59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-29223285IPR003657WRKY domain
SuperFamilySSF1182903.92E-26225285IPR003657WRKY domain
SMARTSM007745.0E-37226284IPR003657WRKY domain
PfamPF031061.4E-25227283IPR003657WRKY domain
PROSITE profilePS5081123.606227285IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.9E-37424499IPR003657WRKY domain
SuperFamilySSF1182901.26E-28431499IPR003657WRKY domain
PROSITE profilePS5081138.733434499IPR003657WRKY domain
SMARTSM007746.6E-38439498IPR003657WRKY domain
PfamPF031064.3E-25440497IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 649 aa     Download sequence    Send to blast
MEGVSFWGTI CLNYFGFGLM QRLLLLGACT SVCNSRSSEA EVFFFKVLFH IKVTINVLQV  60
QPSPTTGKFP FSSGMESRNS ALMMEDLDKR KENALESMNS SSFSFKPVPE TAPSLFPGAT  120
SRVNPYNFSQ QGFPNIEVSV HSQNSLLSHH VEATQNPTQN GTLHQASDFP RFSAEKDVTS  180
SNVAPESRTF QAVGSNVEHS PPLNELQDED IDQRGGGDQN VVGAPADDGY NWRKYGQKQV  240
KGSEYPRSYY KCTHPNCPVK KKVERSQEGH ITEIIYKGAH NHPKPPPNRR SALGSTNSLG  300
DLQVDGAEQG ASGDLGRANI QKAPGAGGGF DWRNNNLEAT SSVNMGSEYC NRSASFPAQN  360
NTQLESGDAV DVSSTFSNDE DEDDRATHGS VSQGYDGEGD ESESKRRKVE TYSADMTGAT  420
RAIREPRVVV QTTSEVDILD DGYRWRKYGQ KVVKGNPNPR SYYKCTSAGC NVRKHVERAS  480
HDLKSVITTY EGKHNHDVPA ARNSSHVNSG ASNTHPTPVP APAQNHLHRP EPAQLQNAMA  540
RFDRQPSLGS FGMSGRPQLG PTPGFSYGMN QQGGLSSLAM AGFHPHQNKP GEVPIHSYLG  600
QSRPMHDMGF MFPKEEPKVE PMSDPGLNLS NGSSAYQQFM NRLPLGPQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-37227500878Probable WRKY transcription factor 4
2lex_A8e-37227500878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB7111240.0AB711124.1 Solanum tuberosum StWRKY11 mRNA for transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016581528.10.0PREDICTED: probable WRKY transcription factor 2 isoform X2
SwissprotQ9FG771e-144WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLA0A1U8HJX50.0A0A1U8HJX5_CAPAN; probable WRKY transcription factor 2 isoform X2
STRINGPGSC0003DMT4000569520.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37112341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-146WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]