PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01077.1_g00004.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 310aa    MW: 34391.8 Da    PI: 8.568
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01077.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.00035112131221
                              EETTTTEEESSHHHHHHHHH CS
                  zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                              +C+ Cgk F++  +L  H+r
  Sme2.5_01077.1_g00004.1 112 TCSMCGKNFPSMKSLFGHMR 131
                              6******************8 PP
2zf-C2H213.60.0002281296116
                              EEETTTTEEESSHHHH CS
                  zf-C2H2   1 ykCpdCgksFsrksnL 16 
                              ykC+ CgksF ++  L
  Sme2.5_01077.1_g00004.1 281 YKCNTCGKSFATHQAL 296
                              9*********998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.87E-55582No hitNo description
SMARTSM003550.585880IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.7255885IPR007087Zinc finger, C2H2
PfamPF139125.3E-85980IPR007087Zinc finger, C2H2
PROSITE patternPS0002806080IPR007087Zinc finger, C2H2
SMARTSM003550.033111133IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.702111133IPR007087Zinc finger, C2H2
SuperFamilySSF576671.31E-8112133No hitNo description
PfamPF139126.0E-7113135IPR007087Zinc finger, C2H2
PROSITE patternPS000280113133IPR007087Zinc finger, C2H2
SuperFamilySSF576671.31E-8276296No hitNo description
PfamPF139124.5E-4281297IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.4E-4281295IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MVDYQVGKGM VWMNLKISEN DVLEDHQEEK DVMKVGDKDE DEDVDDEIRK NNDDNKGRIC  60
HVCKKGFGSG KALGGHMRIH VQGSKKQLLS DEKAEKLKAL ENYNNDNQLL PTCSMCGKNF  120
PSMKSLFGHM RCHPERAWRG IQPPNLKSND EIHVKKAKKP ASATTDVSSV PGWSVRAKRG  180
RKPGAEEATD SVSKDEEKLQ DAVHHLMLLA NGDSIESGVT GDQLEKTNSN SLTSKAENEE  240
FHASDESRII DTTKRKKKKL KLRHLNSVIP ASATAVTPEK YKCNTCGKSF ATHQALGCVI  300
SANTNIRSPK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1254261RKKKKLKL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2403593e-40AC240359.1 Solanum tuberosum chromosome 7 clone RHPOTKEY169K08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006346239.11e-112PREDICTED: zinc finger protein ZAT2
TrEMBLM1C0521e-111M1C052_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000569571e-112(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20502263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.12e-18C2H2 family protein