PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01071.1_g00003.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 297aa    MW: 33636.6 Da    PI: 6.9532
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01071.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.26.3e-32141199259
                              --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                              +D ++WrKYGqK++kgs++pr+YY+C+++ gC ++k+ver+++dp+++++tY+geHnh+
  Sme2.5_01071.1_g00003.1 141 SDMWSWRKYGQKPIKGSPYPRGYYKCSTSkGCLARKQVERNRSDPNMFIVTYTGEHNHP 199
                              79************************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.4E-32130201IPR003657WRKY domain
PROSITE profilePS5081135.427135201IPR003657WRKY domain
SuperFamilySSF1182902.22E-27138201IPR003657WRKY domain
SMARTSM007742.6E-38140200IPR003657WRKY domain
PfamPF031069.6E-27142199IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010150Biological Processleaf senescence
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MEDDWDLHAV VRSCTTTTSS AISFNNFPST THNNDDSLFS FQHLVDKPRI LLNTNTTELR  60
KPFITHQTLL SPISVLPPLQ DLPAPSQQQQ QQHDVHHLSN MKLIQHKKPL TCTLHPQTPR  120
NKRRKNQLKK VCQVAADGLS SDMWSWRKYG QKPIKGSPYP RGYYKCSTSK GCLARKQVER  180
NRSDPNMFIV TYTGEHNHPM PTHRNSSGIA RQKTTKPTTS SPAPENEEIS RDEKEDFFED  240
DDDEFGLDKM EPDDDFFDGL DELKIPATGD SLPEKFPPTL QLPWLVNNAA TTAAGGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-21125202280Disease resistance protein RRS1
5w3x_D1e-21125202280Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00422DAPTransfer from AT4G01250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754493e-61HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015169531.11e-126PREDICTED: WRKY transcription factor 22-like
TrEMBLA0A2G2VST21e-114A0A2G2VST2_CAPBA; WRKY transcription factor 22
STRINGSolyc10g011910.2.11e-110(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25912457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.11e-65WRKY family protein