PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_01047.1_g00014.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bHLH | ||||||||
Protein Properties | Length: 317aa MW: 35102.6 Da PI: 5.3662 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 19.3 | 2.1e-06 | 164 | 206 | 8 | 55 |
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r RR +i ++++ L ellP + +++K a+ + +++Ik+Lq Sme2.5_01047.1_g00014.1 164 SDRHRRMKIAEGIDALGELLPCS--KQGGK---ASQMDEIIDHIKYLQ 206 689*******************7..25555...556679999999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.674 | 156 | 205 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.57E-8 | 158 | 211 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.75E-5 | 158 | 208 | No hit | No description |
SMART | SM00353 | 0.003 | 162 | 211 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.6E-6 | 163 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MGEQNQPNAP ESQWAFLGRT DDSYYLPVHE LNKQYMAGVG TDGIHYFPVP SPLWIHDQQT 60 PHNYVEYLAE NVVSEVQADA SPEASGFRLV EGSADMIPQE IRYPRPYYEG VPLNCLIGSE 120 HPRGALTWDP RGDARHASGP CPEASAAGSS YPSKCSGKAR AALSDRHRRM KIAEGIDALG 180 ELLPCSKQGG KASQMDEIID HIKYLQFQMK CSLGRVLAAR DFRVVGAFER NELKPKTDVH 240 ILVTFQKNVD NLLISVGADW VANGFGHCIL DEQQIESLED TMGKLLEVNP SMTTQLLESK 300 GLFVMPMALA EGLHHRD |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975448 | 8e-84 | HG975448.1 Solanum pennellii chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006355867.1 | 1e-150 | PREDICTED: uncharacterized protein LOC102578458 isoform X2 | ||||
TrEMBL | M0ZK86 | 1e-149 | M0ZK86_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400002512 | 1e-150 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9646 | 16 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24260.1 | 1e-12 | LJRHL1-like 1 |