PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00896.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | C2H2 | ||||||||
Protein Properties | Length: 115aa MW: 12899.3 Da PI: 9.8655 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13 | 0.00031 | 45 | 67 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k Fs+ L H +H Sme2.5_00896.1_g00001.1 45 FECKTCNKYFSSFQALGGHRASH 67 89**********99999998887 PP | |||||||
2 | zf-C2H2 | 16 | 3.5e-05 | 88 | 110 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++Cg+ Fs L H+r+H Sme2.5_00896.1_g00001.1 88 HKCTICGMEFSLGQALGGHMRRH 110 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.263 | 45 | 72 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.0E-10 | 45 | 67 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.27E-9 | 45 | 110 | No hit | No description |
SMART | SM00355 | 0.31 | 45 | 67 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 47 | 67 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 5.3E-4 | 83 | 110 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 1.3E-9 | 87 | 112 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.494 | 88 | 115 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.037 | 88 | 110 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 115 aa Download sequence Send to blast |
MTSMKRSRED DGQVEVEAMA NGALMLLSRF NNTSSSSDHH HVNDFECKTC NKYFSSFQAL 60 GGHRASHNNR PKLLGEFLAQ TNKKSKVHKC TICGMEFSLG QALGGHMRRH RXPIS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:18201973}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006363363.1 | 8e-68 | PREDICTED: zinc finger protein ZAT11-like | ||||
Swissprot | Q9LX85 | 2e-26 | ZAT8_ARATH; Zinc finger protein ZAT8 | ||||
TrEMBL | M1B9D7 | 2e-66 | M1B9D7_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400040143 | 3e-67 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA366 | 24 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46080.1 | 1e-28 | C2H2 family protein |