PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00708.1_g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | WRKY | ||||||||
Protein Properties | Length: 222aa MW: 25719.8 Da PI: 7.8805 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 25.5 | 2.6e-08 | 93 | 139 | 17 | 59 |
T-SS-EEEEEE-ST...T---EEEEEE-SSSTTE.EEEEEES--SS- CS WRKY 17 gsefprsYYrCtsa...gCpvkkkversaedpkv.veitYegeHnhe 59 g r YYrCt++ +C ++k+v+ +e+p + ++tY g+H+++ Sme2.5_00708.1_g00006.1 93 GCYKRRCYYRCTHKydqDCGATKQVQIIQENPIImYHTTYFGNHTCN 139 556679*******99999***********99975168********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.4E-8 | 88 | 140 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.62E-9 | 92 | 140 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-7 | 92 | 140 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.4E-9 | 93 | 138 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MEDHPHKRVI KQLVEGKRFA IQLQSLLKQD YDKSISADEL IVKIWGSFTQ AISELNTLGN 60 CKTTLAHNQI EEVDKPDRSS SELKKKEKQD RRGCYKRRCY YRCTHKYDQD CGATKQVQII 120 QENPIIMYHT TYFGNHTCNS SKIPKHKHNS QFKPRSDSTV LKEESKGQSD NVSSIVDSNL 180 WQDFMPSSPS AHDSTLAPHK SSYFEMEDYF GKFVDIETIE FS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in senescence, biotic and abiotic stress responses by modulating various phytohormones signaling pathways (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Required for the resistance (R) gene Mi-1-mediated resistance to potato aphid (e.g. M.euphorbiae) and root-knot nematode (e.g. M.javanica) (PubMed:21898085). {ECO:0000250|UniProtKB:Q9LY00, ECO:0000250|UniProtKB:Q9SUP6, ECO:0000269|PubMed:21898085}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced in response to potato aphid (e.g. M.euphorbiae) infestation and root-knot nematode (e.g. M.javanica) inoculation. Up-regulated by salicylic acid (SA) and suppressed by methyl jasmonate (MeJA). {ECO:0000269|PubMed:21898085}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM062182 | 8e-80 | KM062182.1 Solanum habrochaites cultivar EC520061 WRKY transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015068360.1 | 1e-100 | WRKY DNA-binding transcription factor 70 | ||||
Swissprot | K4BIZ9 | 4e-95 | WRK70_SOLLC; WRKY DNA-binding transcription factor 70 | ||||
TrEMBL | A0A089Q848 | 3e-98 | A0A089Q848_SOLHA; WRKY transcription factor | ||||
STRING | PGSC0003DMT400053122 | 1e-96 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6199 | 22 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56400.1 | 9e-09 | WRKY DNA-binding protein 70 |
Publications ? help Back to Top | |||
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