PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00696.1_g00004.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 274aa    MW: 30302.2 Da    PI: 6.7066
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00696.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.0001486108123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              y+C+ C + F++   L  H+++H
  Sme2.5_00696.1_g00004.1  86 YTCTFCRREFRSAQALGGHMNVH 108
                              9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.08E-683113No hitNo description
PfamPF139122.2E-586109IPR007087Zinc finger, C2H2
SMARTSM003550.006686108IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.15786113IPR007087Zinc finger, C2H2
PROSITE patternPS00028088108IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MAAELGVLSS TQLQKLAQSQ EQQNQQQSSA PQPLLNVCSA TDFWMWNAKQ AIAPTTAQDD  60
DDSWEVRAFE EDTGNAMGTT WPPRSYTCTF CRREFRSAQA LGGHMNVHRR DRARLHQALP  120
QYASNHNHNH ISSPNVNSAL LIPTQEFVAK GGLCLLYSLP NTSSTHVFNN PTSRKSCTMN  180
NNSSSSTLNL SISPYPTNNN LMSPTPYPPP PSLNFPTNRP NPSINTSSNT CNDDDSNIKH  240
DYGSNKRDSL IEDTLDLELR LGWRSSSSTT TSSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A3e-1381108229superman protein
2l1o_A3e-1381108229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755200.0HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016554111.11e-141PREDICTED: zinc finger protein JAGGED
TrEMBLA0A1U8F6311e-140A0A1U8F631_CAPAN; Uncharacterized protein
TrEMBLA0A2G3AFF71e-140A0A2G3AFF7_CAPAN; zinc finger protein JAGGED
STRINGPGSC0003DMT4000451481e-121(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59532133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.11e-33C2H2 family protein