PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00676.1_g00004.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 262aa    MW: 30339.6 Da    PI: 9.1483
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00676.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding271e-081451148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+WT+eEd ll ++++++G g          + R++k+c++rw +yl
  Sme2.5_00676.1_g00004.1 14 KGAWTAEEDMLLTNYIHLHGEG----------LLRCGKSCRLRWVNYL 51
                             79******************99..........689***********97 PP
2Myb_DNA-binding53.65.2e-1757101147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              rg++++eEdel++++  +lGg+ W++Ia ++  gRt++++k++w++ 
  Sme2.5_00676.1_g00004.1  57 RGNFSPEEDELIIRLYSLLGGR-WSLIAGRLS-GRTDNEIKNHWHTN 101
                              89********************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.738951IPR017877Myb-like domain
SuperFamilySSF466891.72E-241198IPR009057Homeodomain-like
SMARTSM007173.7E-61353IPR001005SANT/Myb domain
PfamPF002492.6E-71451IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-141558IPR009057Homeodomain-like
PROSITE profilePS5129425.48852106IPR017930Myb domain
SMARTSM007175.6E-1556104IPR001005SANT/Myb domain
PfamPF002491.8E-1457101IPR001005SANT/Myb domain
CDDcd001677.83E-1059102No hitNo description
Gene3DG3DSA:1.10.10.605.1E-2459106IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MGRTPCCSKV GMKKGAWTAE EDMLLTNYIH LHGEGLLRCG KSCRLRWVNY LRPGIKRGNF  60
SPEEDELIIR LYSLLGGRWS LIAGRLSGRT DNEIKNHWHT NLMKKLGASG IEPKSKKSNA  120
KRTTQPVTTK KSRQNKEEKC RRQDKKSRKT DNLLQQEVEK LESHIKKDEV VAKIQVHIPK  180
PIRLIPHGHS YSSSSQSNYQ ENSPRLISSE EDKIEENDEI YEKFQLFDEL LNGCDNNISS  240
DCIEANMLKE VYKEYFQLLY EI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-191210625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027769640.11e-110transcription factor MYB8-like
SwissprotP200269e-52MYB1_HORVU; Myb-related protein Hv1
SwissprotP813936e-52MYB08_ANTMA; Myb-related protein 308
TrEMBLA0A1U7YKB09e-96A0A1U7YKB0_NICSY; transcription repressor MYB6-like
STRINGXP_009802421.11e-96(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.18e-54myb domain protein 3
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]