PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_00650.1_g00014.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

SRS

Protein Properties

Length: 221aa MW: 24986.7 Da PI: 8.7318

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00650.1_g00014.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	176	1.8e-54	16	156	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalss 88 + +Cqd GnqakkdC+++RCRtCCksrgf+C+thvkstWvp++ rr r++ ++ ++ +++++ ++a +++kr +++ Sme2.5_00650.1_g00014.1 16 SSNRCQDYGNQAKKDCTYMRCRTCCKSRGFQCETHVKSTWVPVSIRRPRHHLHHHINTIQQQQQqHQAGPNSKRY-------RSNE 94 5679******************************************977666654433332202222222221.......1222 PP DUF702 89 tklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +++ e ++P ev +avfrc+rvss+d+ +++aYqt+v+i+GhvfkGiLydqG+++ Sme2.5_00650.1_g00014.1 95 SQV----IGDDQEGGDFPGEVCFPAVFRCIRVSSIDNVVDQYAYQTSVKIAGHVFKGILYDQGADH 156 222....223346778*********************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.2E-56	18	155	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	6.8E-26	20	59	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	9.4E-25	107	153	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MMRRREEDGG ISSSSSSNRC QDYGNQAKKD CTYMRCRTCC KSRGFQCETH VKSTWVPVSI 60 RRPRHHLHHH INTIQQQQQQ HQAGPNSKRY RSNESQVIGD DQEGGDFPGE VCFPAVFRCI 120 RVSSIDNVVD QYAYQTSVKI AGHVFKGILY DQGADHESPR YNHNNMVGES SSRVFQLQQP 180 SNLPTTATTT TSPPPPSSTY PNLFSAFSMP GTQFFQYPKS S

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016582417.1	1e-105	PREDICTED: protein SHI RELATED SEQUENCE 3-like
Swissprot	Q9LQZ5	7e-45	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	A0A1U8HG71	1e-104	A0A1U8HG71_CAPAN; Protein SHI RELATED SEQUENCE 4
TrEMBL	A0A2G2XNM3	1e-104	A0A2G2XNM3_CAPBA; Protein SHI RELATED SEQUENCE 4
TrEMBL	A0A2G3AGZ9	1e-104	A0A2G3AGZ9_CAPAN; protein SHI RELATED SEQUENCE 3-like
TrEMBL	A0A2G3BW45	1e-104	A0A2G3BW45_CAPCH; Protein SHI RELATED SEQUENCE 4
STRING	Solyc01g110140.2.1	1e-92	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4156	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	4e-41	SHI-related sequence 5

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]