PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00632.1_g00022.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 632aa    MW: 71697.9 Da    PI: 6.2803
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00632.1_g00022.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS364.91.1e-1112536241374
                     GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                              l+ lL++cA+a++s d + a++lL r++e++sp+gd ++Rla+y+++AL+arl+++++ ly a+++s+ s    ++ l+a+k++  
  Sme2.5_00632.1_g00022.1 253 LRALLTQCAQAMASYDSRTANELLMRIREHSSPHGDGTERLAHYLANALEARLSGTGTALYTAFASSRIS---AANILKAYKTYIT 335
                              5789**********************************************************99999998...999********** PP

                     GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAe 170
                              ++P+  +s++ aN+ I + ++g+ ++HiiD++i +G+QWp+L+q L+ Rp+gpp+lRiTg++ p++g   +e++e tg+rL+k+++
  Sme2.5_00632.1_g00022.1 336 ACPFRLLSNIFANKYIRKLIAGAPKIHIIDIGILYGFQWPCLIQGLSMRPGGPPELRITGIDLPQPGfkPAERVEDTGRRLEKYCK 421
                              ******************************************************************999***************** PP

                     GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256
                              +++vpf f++ +ak++e+++++eL+++++E+l+Vn+ ++l +++de+v  +s+rd+vL+l+++++P+++++   +   n++ F++r
  Sme2.5_00632.1_g00022.1 422 RFHVPFVFKA-IAKKWESITIDELEIQKDEVLVVNSLYRLGNIPDETVVPNSPRDAVLNLIRRIRPDMFIHGVLNGTFNTPFFVTR 506
                              **********.7************************************************************************** PP

                     GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
                              f eal ++s+lfd++ea++pre+e+r+  E+e+++r+++nv+aceg+er+er et+++W+ r  +aGFk++pl+++++k ++  +r
  Sme2.5_00632.1_g00022.1 507 FREALFHFSSLFDMFEATIPREDEDRKLFEEEVFARDAMNVIACEGTERVERPETFKQWQLRCVRAGFKQLPLDQEIVKIVRNKVR 592
                              ************************************************************************************** PP

                     GRAS 343 kvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                + + ++v+e+ +++++gWk+r  +++S+W+
  Sme2.5_00632.1_g00022.1 593 SEYHKDFSVDEDGNWMLQGWKGRVTYALSCWK 624
                              *99888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.399227604IPR005202Transcription factor GRAS
PfamPF035144.0E-109253624IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    Send to blast
MDPSTIFNNH PSFDEDYLSN LVIGDGDADA DQEGEKDYSD AMYKFLNQML MEEDDLENKP  60
CMFHDCMALQ ATEKYFSDVL HGSENIKSPQ SVIINPSSYL SSNSPDSIES PQWDLNFESP  120
LSTMTSSNHD SFFASFGNDQ FEEATANVFQ SGSSSNSPTG LREKKNHHRG DAAADQQRSN  180
KQQATFTHDE SEPLEMYDNV LLCLNNPYVE HRNATSVTSC SPPNEAKKAT KVRRPKGGRT  240
HGSSIVKREI VDLRALLTQC AQAMASYDSR TANELLMRIR EHSSPHGDGT ERLAHYLANA  300
LEARLSGTGT ALYTAFASSR ISAANILKAY KTYITACPFR LLSNIFANKY IRKLIAGAPK  360
IHIIDIGILY GFQWPCLIQG LSMRPGGPPE LRITGIDLPQ PGFKPAERVE DTGRRLEKYC  420
KRFHVPFVFK AIAKKWESIT IDELEIQKDE VLVVNSLYRL GNIPDETVVP NSPRDAVLNL  480
IRRIRPDMFI HGVLNGTFNT PFFVTRFREA LFHFSSLFDM FEATIPREDE DRKLFEEEVF  540
ARDAMNVIAC EGTERVERPE TFKQWQLRCV RAGFKQLPLD QEIVKIVRNK VRSEYHKDFS  600
VDEDGNWMLQ GWKGRVTYAL SCWKPAKQSV KF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-4425962525380Protein SCARECROW
5b3h_A2e-4425962524379Protein SCARECROW
5b3h_D2e-4425962524379Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015058087.10.0scarecrow-like protein 11 isoform X2
TrEMBLQ00LP50.0Q00LP5_SOLLC; GRAS4
STRINGSolyc01g100200.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.10.0GRAS family protein