PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_00588.1_g00014.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

C3H

Protein Properties

Length: 333aa MW: 37909.7 Da PI: 7.5891

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00588.1_g00014.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28.7	2.3e-09	88	112	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+ C f++ GtC+ G+ C+FaHg Sme2.5_00588.1_g00014.1 88 YKTRMCAKFLE-GTCRNGEHCTFAHG 112 9********.***********9 PP
2	zf-CCCH	25.7	1.9e-08	147	169	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 +++C+ f+ + +C+yGd+C+F H Sme2.5_00588.1_g00014.1 147 MKICKKFYNGEECPYGDKCNFLH 169 579****66********** PP
3	zf-CCCH	33.4	7.5e-11	222	248	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt++C+ + tG+C++ drC+FaHg+ Sme2.5_00588.1_g00014.1 222 WKTKICSKWETTGQCPFHDRCHFAHGQ 248 8************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	2.1E-15	84	120	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.63E-9	85	118	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.432	87	114	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.0E-4	87	113	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.4E-6	88	112	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.19E-7	144	171	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.089	144	172	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0027	144	171	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.9E-6	147	169	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.5E-8	147	170	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.75E-10	218	253	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.5E-16	218	253	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.004	221	249	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.3E-5	221	248	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.5E-8	222	248	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MSFSDQPPVA SHFMQMPFTG GDAGDGWPHS PMNHELFESY SQFEHGPPFK RMRDFDNNSP 60 NSAAFPAMNS RVNPPNLPGS KGTSHIFYKT RMCAKFLEGT CRNGEHCTFA HGVEDLREPP 120 PNWQDLVREK DRGVDNWNDD QKIIHRMKIC KKFYNGEECP YGDKCNFLHE RPPKFKTDMT 180 RHRESSAISI GTTGNRSDPE LTELSKHGNA DSDAFRIKPV YWKTKICSKW ETTGQCPFHD 240 RCHFAHGQSE LQVPTGRVET EMLTNSGPIT ARPFSVPLVD SNSAHTLVNA SMQEEKEGKK 300 MLKWKLSKKI CRIYGDWIDG LVPPHLLPEN ADK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975450	0.0	HG975450.1 Solanum pennellii chromosome ch11, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006340244.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 39-like
Swissprot	Q9LT81	5e-81	C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBL	M1CEA9	0.0	M1CEA9_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400065585	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6553	24	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19360.1	2e-75	C3H family protein