PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00579.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HSF
Protein Properties Length: 335aa    MW: 37998.5 Da    PI: 10.2433
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00579.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind828.6e-263694260
                             HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS
             HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60
                             Fl k+y++++d+++++++sws ++nsfvv+d+ efa+++LpkyFkh+nf+SFvRQLn+Y
  Sme2.5_00579.1_g00002.1 36 FLVKTYDMVDDSSTDKIVSWSPTNNSFVVWDPPEFARDLLPKYFKHNNFSSFVRQLNTY 94
                             9********************999*********************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.8E-2928105IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.8E-3132189IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.78E-2534103IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004479.2E-2336106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-153659IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-157486IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-158799IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MESNSSGSGK GAAGEGVPAL QPAPAPMPSA NAPPPFLVKT YDMVDDSSTD KIVSWSPTNN  60
SFVVWDPPEF ARDLLPKYFK HNNFSSFVRQ LNTYMAPSSF VKLKQSRLRY GKPSTVYLGM  120
PLRNKHNEVV IWDIIIEKTW KSVGKKLDKL RRDFLWKGNK EGGGYNLVKW DVAHSSKNQA  180
DFKRLQRLKE NLLKLGDAWD YPNLLQLKFN KFSRFLFVIS VDEEERCVII LLENAFNEAW  240
TKLLQKFEAG QLTAKVGRFP RLNPNPDAIR WKHERDGEFF VGRIYQSNLA THPGGIFGPS  300
LEVQHSTECF GWPAKGDRGL PRLVARSAAP INTKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-191194187Heat shock factor protein 1
5d5v_B8e-191194187Heat shock factor protein 1
5d5v_D8e-191194187Heat shock factor protein 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0115209e-93AP011520.1 Solanum lycopersicum DNA, chromosome 8, clone: C08SLe0108P16, complete sequence.
GenBankHG9755209e-93HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
GenBankX675999e-93X67599.1 L.esculentum Le-hsf8 gene for heat stress transcription factor 8.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57224113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17750.15e-31heat shock factor 1