PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00556.1_g00018.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | WRKY | ||||||||
Protein Properties | Length: 224aa MW: 25475.7 Da PI: 6.9023 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.6 | 3.9e-31 | 99 | 158 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++DgynWrKYGqK+ ++++ pr+YY+C++a +Cpvkkkv+rs +dp++++ tYegeHnh+ Sme2.5_00556.1_g00018.1 99 VKDGYNWRKYGQKVTRDNPSPRAYYKCSFApTCPVKKKVQRSVNDPSILVATYEGEHNHP 158 58***************************99****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.2E-30 | 92 | 160 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 27.841 | 94 | 160 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-26 | 96 | 160 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.3E-35 | 99 | 159 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.5E-25 | 100 | 158 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MLDEELIRMR EENKKLVTML TNLCENYTSL KTQIIELQQK YSTHEEDNSK LCFSRKRKAE 60 EDCSENYVEE ASPKRPREIT TDVSTVCVKT NPSDQNSVVK DGYNWRKYGQ KVTRDNPSPR 120 AYYKCSFAPT CPVKKKVQRS VNDPSILVAT YEGEHNHPQP SQAELTVPLV NQDVTTNPTF 180 LNKFMEDINT SSLQQHLVEQ MASSLSKNPS FAATVATAIS GLLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-21 | 98 | 161 | 16 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 3e-21 | 98 | 161 | 16 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250|UniProtKB:Q9SUP6}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006361532.1 | 1e-134 | PREDICTED: probable WRKY transcription factor 40 | ||||
Swissprot | Q9SAH7 | 4e-60 | WRK40_ARATH; Probable WRKY transcription factor 40 | ||||
TrEMBL | M1ABK0 | 1e-133 | M1ABK0_SOLTU; Uncharacterized protein | ||||
TrEMBL | M1ABK1 | 1e-133 | M1ABK1_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400019058 | 1e-133 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4500 | 22 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 2e-62 | WRKY DNA-binding protein 40 |