PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_00528.1_g00023.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

HRT-like

Protein Properties

Length: 639aa MW: 71525.5 Da PI: 10.3552

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00528.1_g00023.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	54.7	1.7e-17	299	329	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv+l++GsvC r+P+kg+KRC+eHKGm+i Sme2.5_00528.1_g00023.1 299 ICGVALGHGSVCIRPPIKGNKRCAEHKGMKI 329 8****************************97 PP
2	HRT-like	40	6.4e-13	345	374	1	30
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 iCG+il+ G +C+r+P + +KRC eH G+R Sme2.5_00528.1_g00023.1 345 ICGFILDSGVPCTRKPFQRNKRCIEHTGRR 374 8***************************99 PP
3	HRT-like	53	5.6e-17	417	447	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv l+dGs C+rqP gR RCe HKGmR+ Sme2.5_00528.1_g00023.1 417 ICGVYLNDGSLCTRQPESGRNRCERHKGMRV 447 8*****************************7 PP
4	HRT-like	53.9	3e-17	478	508	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CG++l +Gs C+rqP+ gRKRCe+HKGmR+ Sme2.5_00528.1_g00023.1 478 TCGATLCNGSLCTRQPASGRKRCEQHKGMRV 508 7*****************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00719	0.00169	125	199	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:2000033	Biological Process	regulation of seed dormancy process
GO:0097100	Molecular Function	supercoiled DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 639 aa Download sequence Send to blast
MQLQSRMAAG NGSFTGRHAN KGKKWKVEIA IMQLQSRMPA GDGSFTGRLK REDCKRTKHD 60 SAFCDWKILI GPNDWEYHLL RKEGAERYRT QNLPNCTSCS GVYELGIAVP RRKAGREASR 120 LDPDYIIPVY VGKSDNVRTR LQQYGREGAH LDNEIVSGSK RAGLFTEAFS RGFSIVYRWA 180 PMNDNKEAER TEARLLDTFD YAWNKGSNGV RRQNDVLRKV EGISRGTRLP AFIRKVQLSL 240 EKQKGIRIKA CEPLCLENGS DFHDSFKSTA FLPQIFKFGR SQPRIVSVRF GVNGDPDTIC 300 GVALGHGSVC IRPPIKGNKR CAEHKGMKIN SVHESTSPAE ENAPICGFIL DSGVPCTRKP 360 FQRNKRCIEH TGRRNGGFIS QPTTNNPVVG YRTSSRNDLS SRVDTQHSQI HQSHNIICGV 420 YLNDGSLCTR QPESGRNRCE RHKGMRVQEP ISIPSVFAGP ATKMHRNIDL PSVSYSPTCG 480 ATLCNGSLCT RQPASGRKRC EQHKGMRVQE PIFIPSVFAG PTTKMHRNID LPSVSYSPTC 540 GATLRNGSFC SRTPSDGCNV AVNETVMRMP GFETRMHEMK LLAEVDQPGS RIDNYVTQLS 600 FVLSRKAASL VSLQARLARF QHRLKEQEIL SRKRVPRQT

Sequence ? help Back to Top

Protein Sequence Length: 639 aa Download sequence Send to blast

MQLQSRMAAG NGSFTGRHAN KGKKWKVEIA IMQLQSRMPA GDGSFTGRLK REDCKRTKHD  60
SAFCDWKILI GPNDWEYHLL RKEGAERYRT QNLPNCTSCS GVYELGIAVP RRKAGREASR  120
LDPDYIIPVY VGKSDNVRTR LQQYGREGAH LDNEIVSGSK RAGLFTEAFS RGFSIVYRWA  180
PMNDNKEAER TEARLLDTFD YAWNKGSNGV RRQNDVLRKV EGISRGTRLP AFIRKVQLSL  240
EKQKGIRIKA CEPLCLENGS DFHDSFKSTA FLPQIFKFGR SQPRIVSVRF GVNGDPDTIC  300
GVALGHGSVC IRPPIKGNKR CAEHKGMKIN SVHESTSPAE ENAPICGFIL DSGVPCTRKP  360
FQRNKRCIEH TGRRNGGFIS QPTTNNPVVG YRTSSRNDLS SRVDTQHSQI HQSHNIICGV  420
YLNDGSLCTR QPESGRNRCE RHKGMRVQEP ISIPSVFAGP ATKMHRNIDL PSVSYSPTCG  480
ATLCNGSLCT RQPASGRKRC EQHKGMRVQE PIFIPSVFAG PTTKMHRNID LPSVSYSPTC  540
GATLRNGSFC SRTPSDGCNV AVNETVMRMP GFETRMHEMK LLAEVDQPGS RIDNYVTQLS  600
FVLSRKAASL VSLQARLARF QHRLKEQEIL SRKRVPRQT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975446	1e-167	HG975446.1 Solanum pennellii chromosome ch07, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006345326.1	0.0	PREDICTED: uncharacterized protein LOC102589426 isoform X1
Refseq	XP_009593858.1	0.0	PREDICTED: protein EFFECTOR OF TRANSCRIPTION 2 isoform X1
Refseq	XP_016450420.1	0.0	PREDICTED: protein EFFECTOR OF TRANSCRIPTION 2-like isoform X1
TrEMBL	A0A1S3YDY4	0.0	A0A1S3YDY4_TOBAC; protein EFFECTOR OF TRANSCRIPTION 2-like isoform X1
TrEMBL	M1D767	0.0	M1D767_SOLTU; Uncharacterized protein
STRING	XP_009593858.1	0.0	(Nicotiana tomentosiformis)
STRING	PGSC0003DMT400083817	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7741	23	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	1e-92	effector of transcription2