PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00441.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | C2H2 | ||||||||
Protein Properties | Length: 118aa MW: 13460.5 Da PI: 9.9135 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12 | 0.00065 | 44 | 66 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk+ k + ++H +++ Sme2.5_00441.1_g00001.1 44 FACRKCGKCLAVKGDWRTHEKNC 66 78*****************9987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 118 aa Download sequence Send to blast |
MLGIPCYCCE EGCKNNINHP RAKPLKDFRT LQTHYKRKHG TKRFACRKCG KCLAVKGDWR 60 THEKNCGKRW LCVCGSDFKH KRSLKDHIAS FGEGHAPSPP TNNSFEGVEV HRAGNFFV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269|PubMed:11782451, ECO:0000269|PubMed:21477081}. | |||||
UniProt | Probable transcriptional regulator. {ECO:0000305|PubMed:20541552}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975516 | 1e-118 | HG975516.1 Solanum lycopersicum chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016570849.1 | 4e-80 | PREDICTED: protein TRANSPARENT TESTA 1-like | ||||
Swissprot | Q8VWG3 | 2e-57 | TT1_ARATH; Protein TRANSPARENT TESTA 1 | ||||
Swissprot | Q9SGD1 | 5e-57 | ZWIP3_ARATH; Zinc finger protein WIP3 | ||||
TrEMBL | A0A1U8GRW7 | 1e-78 | A0A1U8GRW7_CAPAN; protein TRANSPARENT TESTA 1-like | ||||
TrEMBL | A0A2G2WZN3 | 8e-79 | A0A2G2WZN3_CAPBA; Protein TRANSPARENT TESTA 1 | ||||
TrEMBL | A0A2G2ZQG0 | 5e-79 | A0A2G2ZQG0_CAPAN; Zinc finger protein WIP3 | ||||
TrEMBL | A0A2G3CNX8 | 1e-78 | A0A2G3CNX8_CAPCH; Protein TRANSPARENT TESTA 1 | ||||
STRING | Solyc04g074320.1.1 | 7e-75 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA462 | 24 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34790.1 | 9e-60 | C2H2 family protein |
Publications ? help Back to Top | |||
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