PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00401.1_g00018.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | E2F/DP | ||||||||
Protein Properties | Length: 415aa MW: 47373.4 Da PI: 10.0285 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 45.2 | 1.5e-14 | 42 | 84 | 37 | 71 |
E2F_TDP 37 e..........dvknkrRRiYDilNVLealnliekkekneirwkg 71 v +rRRiYDi+N+Le+++++++k+kn++rw+g Sme2.5_00401.1_g00018.1 42 WkeagvhtkdrGV--ERRRIYDIVNILESIGVLSRKAKNQYRWNG 84 3445555553345..9***************************98 PP | |||||||
2 | E2F_TDP | 70.8 | 1.6e-22 | 141 | 220 | 1 | 70 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwk 70 rkeksL +l+q+f+kl+++s+ + ++l+++a++L+ + +k+k RR+YDi+NV+ ++nliek + k+ +rw+ Sme2.5_00401.1_g00018.1 141 RKEKSLMILAQNFVKLFHCSDVDLISLDKAASALLGDvhdlmAMKTKTRRLYDIANVFISMNLIEKirspdNGKPVFRWI 220 79****************************************************************99999999999997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01372 | 6.4E-8 | 27 | 84 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 3.9E-13 | 33 | 84 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.63E-9 | 48 | 85 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 4.0E-13 | 51 | 85 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 1.1E-18 | 138 | 221 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 1.3E-22 | 141 | 221 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 2.1E-17 | 142 | 220 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.18E-10 | 143 | 220 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 415 aa Download sequence Send to blast |
MGFYNSFKLI KPYTHHLWRI FLSLKGISWI IPRKVAEALL CWKEAGVHTK DRGVERRRIY 60 DIVNILESIG VLSRKAKNQY RWNGYSAIPK AVDLLKKEGL KDLPSVSSTC HNVSNVIACN 120 HSDVEEKGEG KSSGSHKIDN RKEKSLMILA QNFVKLFHCS DVDLISLDKA ASALLGDVHD 180 LMAMKTKTRR LYDIANVFIS MNLIEKIRSP DNGKPVFRWI AWKENPRSGS PAAAKSDDST 240 RRTFGAEITN IIPKRCRDDS SSDLMSNGQV KRLRVTKDNE LKDKKPEMSA EQLNERGTKD 300 FVFGPFGPSS LPRSGVSGKE KLKQIQNWED LASKYHPRYQ NKAASELFAH YVEAWESWQF 360 PVLSDEFRAW VHRRQSISPT CLNLSYYKWQ MPAAIAMYQC FSSSLLFKPL EAIPN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4yo2_A | 5e-24 | 40 | 207 | 32 | 222 | Transcription factor E2F8 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC215413 | 1e-171 | AC215413.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0189G15, complete sequence. | |||
GenBank | HG975514 | 1e-171 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004232256.1 | 0.0 | E2F transcription factor-like E2FF isoform X1 | ||||
TrEMBL | A0A3Q7FAN7 | 0.0 | A0A3Q7FAN7_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g087310.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2522 | 24 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01330.1 | 4e-73 | DP-E2F-like protein 3 |