PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00343.1_g00010.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 82aa    MW: 9680.2 Da    PI: 10.4679
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00343.1_g00010.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding506.7e-16855148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+W  eEd++l+ +v  lG ++W++ a+  g++R++k+c++rw +yl
  Sme2.5_00343.1_g00010.1  8 KGPWLDEEDDRLAYVVSILGDRRWDALAKASGLRRSGKSCRLRWMNYL 55
                             79*********************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.378159IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.3E-18358IPR009057Homeodomain-like
SMARTSM007171.0E-11757IPR001005SANT/Myb domain
PfamPF002496.7E-14855IPR001005SANT/Myb domain
SuperFamilySSF466892.01E-18982IPR009057Homeodomain-like
CDDcd001674.54E-81055No hitNo description
Gene3DG3DSA:1.10.10.605.1E-75982IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 82 aa     Download sequence    Send to blast
MQEVKLRKGP WLDEEDDRLA YVVSILGDRR WDALAKASGL RRSGKSCRLR WMNYLRPNLK  60
HGHITQDEEH LIIKLQKQLG NK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A7e-14682277MYB PROTO-ONCOGENE PROTEIN
1mse_C8e-14682277C-Myb DNA-Binding Domain
1msf_C8e-14682277C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754488e-56HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015086827.12e-50transcription factor MYB27-like
SwissprotQ9SCP12e-31MYB27_ARATH; Transcription factor MYB27
TrEMBLA0A3Q7HYP84e-49A0A3Q7HYP8_SOLLC; Uncharacterized protein
STRINGSolyc09g008390.1.15e-50(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53200.19e-34myb domain protein 27
Publications ? help Back to Top
  1. Albert NW, et al.
    A conserved network of transcriptional activators and repressors regulates anthocyanin pigmentation in eudicots.
    Plant Cell, 2014. 26(3): p. 962-80
    [PMID:24642943]