PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00297.1_g00019.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 773aa    MW: 87094 Da    PI: 7.452
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00297.1_g00019.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding482.9e-151461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+WT+eEd++l++ +   G  +W+++++  g++R++k+c++rw +yl
  Sme2.5_00297.1_g00019.1 14 KGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYL 61
                             79********************************************97 PP
2Myb_DNA-binding48.22.6e-1571111547
                              -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              ++ E++  +d++++lG++ W++Ia++++ gRt++++k++w+++
  Sme2.5_00297.1_g00019.1  71 SEAEEKMVIDLHARLGNR-WSKIAARLP-GRTDNEIKNHWNTH 111
                              899***************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-20563IPR009057Homeodomain-like
PROSITE profilePS5129414.027961IPR017930Myb domain
SuperFamilySSF466895.08E-2611108IPR009057Homeodomain-like
SMARTSM007178.5E-131363IPR001005SANT/Myb domain
PfamPF002493.5E-141461IPR001005SANT/Myb domain
CDDcd001678.36E-91661No hitNo description
PROSITE profilePS5129426.0562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.3E-2464116IPR009057Homeodomain-like
SMARTSM007171.7E-1466114IPR001005SANT/Myb domain
PfamPF002491.0E-1370111IPR001005SANT/Myb domain
CDDcd001678.59E-1171112No hitNo description
Gene3DG3DSA:1.10.630.107.6E-133298765IPR001128Cytochrome P450
PfamPF000676.1E-104303755IPR001128Cytochrome P450
SuperFamilySSF482644.71E-126303765IPR001128Cytochrome P450
PRINTSPR004631.9E-47330349IPR002401Cytochrome P450, E-class, group I
PRINTSPR004631.9E-47354375IPR002401Cytochrome P450, E-class, group I
PRINTSPR004631.9E-47446464IPR002401Cytochrome P450, E-class, group I
PRINTSPR004631.9E-47561578IPR002401Cytochrome P450, E-class, group I
PRINTSPR003851.0E-8572589IPR001128Cytochrome P450
PRINTSPR004631.9E-47581607IPR002401Cytochrome P450, E-class, group I
PRINTSPR004631.9E-47624642IPR002401Cytochrome P450, E-class, group I
PRINTSPR003851.0E-8625636IPR001128Cytochrome P450
PRINTSPR004631.9E-47665689IPR002401Cytochrome P450, E-class, group I
PRINTSPR004631.9E-47701711IPR002401Cytochrome P450, E-class, group I
PRINTSPR003851.0E-8702711IPR001128Cytochrome P450
PROSITE patternPS000860704713IPR017972Cytochrome P450, conserved site
PRINTSPR004631.9E-47711734IPR002401Cytochrome P450, E-class, group I
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0003677Molecular FunctionDNA binding
GO:0005506Molecular Functioniron ion binding
GO:0016705Molecular Functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037Molecular Functionheme binding
Sequence ? help Back to Top
Protein Sequence    Length: 773 aa     Download sequence    Send to blast
MGRQPCCDKL GVKKGPWTAE EDKKLINFIL TNGQCCWRAV PKLAGLRRCG KSCRLRWTNY  60
LRPDLKRGLL SEAEEKMVID LHARLGNRWS KIAARLPGRT DNEIKNHWNT HIKKKLLKMG  120
IDPVTHEPLN KEGDPTNRII PESDQNKNNG HQQVVVVPES TSIAAAATSS ELENSSTSSS  180
STSSSENSCN ESKLVLDTFK ENDPLLSCLL EANDAPLIDL SWELPVKKFD NIINNNNNNM  240
TSSWDDESFN WLLDCQDFGI HDFGFDNCFN DVELEQAFQG KRTSNFKNNT CGLGISNSNK  300
GLPPGPKALP LIGNLLSLDP ELHTYFLSLS QTYGPICRLW LGKKIGIIIS SPSLAREVLK  360
DQDTIFANRD VPAAGRELTY GGKDIVWKPY GPKWRMLRKV CVRDMLSAST LDSVCVLRKR  420
ELRQTINYFY NQKGLSVNVG EQMFLTILNV ITSMLWGGTV KGEEKASLGA EFRQVVNEMT  480
ELLGAPNVSD FYPGLDRFDL QGVTKKMKVL AKRFDKIYES MIDKRQKMDR NGVGQESKDF  540
VQVLLKLKDE ADPKMPLTMT EIKALLTDMV VGGTDTTSNA VEFAMAEIMN KPDVLRKLQQ  600
EVDTVVGKDN IVEESHIQHL PYFYAVMKEA LRLHPPVPLL VPHCPSETVT VGGYTVPEGS  660
RVFINVWAIQ RDPSIWKNPT EFHPERFLES MWDHSGNDFN YLPFGSGRRI CVGIAMAERM  720
FIYSLASLIH SFDWKLPEGE TLDLTEKFGI VLKKKMPLVA IATPRLSNPT LYE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ylw_A1e-10130076126490Ferruginol synthase
5ym3_A1e-10130076126490Ferruginol synthase
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0092680.0AP009268.1 Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0060C12, complete sequence.
GenBankHG9755200.0HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004245721.10.0flavonoid 3'-monooxygenase
TrEMBLA0A484NNP80.0A0A484NNP8_9ASTE; Uncharacterized protein
STRINGSolyc08g079280.2.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22680.11e-85myb domain protein 85