PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00292.1_g00007.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HSF
Protein Properties Length: 494aa    MW: 55078.3 Da    PI: 4.332
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00292.1_g00007.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.41.1e-33821742103
                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS
             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 
                              Fl+k++++++d+ l+++isw + g+sfvv+d+ ef++ vLp+ Fkhsnf+SFvRQLn+YgF+k++ ++         weF+++ F 
  Sme2.5_00292.1_g00007.1  82 FLSKTFDLVDDPLLDSIISWGSYGESFVVWDPVEFSRLVLPRNFKHSNFSSFVRQLNTYGFRKIDADR---------WEFANEGFL 158
                              9****************************************************************999.........********* PP

                              XXXXXXXXXXXXXXXX CS
             HSF_DNA-bind  88 kgkkellekikrkkse 103
                              +gk++ll++i+r+ks+
  Sme2.5_00292.1_g00007.1 159 RGKRHLLKNIQRRKSH 174
                              *************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.09E-3377171IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.5E-5578171IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.106.8E-3678171IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.4E-1682105IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.4E-2982171IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-16120132IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340121145IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-16133145IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MNPFDIDQES DTEMDSDFAG FSPISLPFAD PSPPFINFGS FPTPLSQHPP VGEREEMEQS  60
AEEGLDVPKP MECLQGTQIP PFLSKTFDLV DDPLLDSIIS WGSYGESFVV WDPVEFSRLV  120
LPRNFKHSNF SSFVRQLNTY GFRKIDADRW EFANEGFLRG KRHLLKNIQR RKSHQAGSSS  180
GSSAEVGKGT MDEIEKLRKE KSLMMQEVVE LQQQQRGTVQ QMESVNEKLQ AAEQRQKQMV  240
SFLAKVFQNP TFLARLWQMK DQGEITYPRI MRKFVKHQPH EPDRVGSSSM EGQIVKYRSD  300
FQDLATSFDS PDFNPIVDQQ LPETGLGAES MPFEGGTVAS EGLTMAHELL NSPDQVVEGA  360
SYFKPEASHF KGKNVASPQL EVMPEYFATF PEELGKETNI SGFSAPGIES MVKEEEVWSM  420
GFDASAGMPS TGAELWGSPS NYVPDFGVSS GLSDLWDIDP LQAAGSAGVD KWPDDESPFG  480
QSESPANQPK NDSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-236417111129Heat shock factor protein 1
5d5v_B2e-236417111129Heat shock factor protein 1
5d5v_D2e-236417111129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU1203600.0GU120360.1 Solanum lycopersicum heat stress transcription factor A3 (HSFA3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015161517.10.0PREDICTED: heat stress transcription factor A-3
TrEMBLM0ZS620.0M0ZS62_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000069170.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87272025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.19e-91heat shock transcription factor A3