PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00265.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NAC | ||||||||
Protein Properties | Length: 293aa MW: 33489.5 Da PI: 8.765 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 156.9 | 8.8e-49 | 29 | 156 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkat 86 pGfrFhPtdeelv +yL++kve+k++ l e+ik++diyk++PwdLp k +++eke+yf++kr +ky+++ r+nr ++ sg+Wkat Sme2.5_00265.1_g00004.1 29 LPGFRFHPTDEELVGFYLRRKVEKKSIGL-EIIKQIDIYKYDPWDLP-KNNNGEKELYFYCKRGRKYKNSVRPNRvTAGSGFWKAT 112 69*************************99.89***************.5567899********************5556******* PP NAM 87 gkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 g dk+++s+ +g+ +glkk+Lv+ykg+a kg+ktdW mhe+rl Sme2.5_00265.1_g00004.1 113 GIDKPIYSSniNGKCIGLKKSLVYYKGSAGKGTKTDWQMHEFRL 156 ********9899999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-51 | 27 | 176 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 51.915 | 28 | 176 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.8E-23 | 30 | 156 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MMEVEKFSNI VTNNYYNNND DDDDDDVVLP GFRFHPTDEE LVGFYLRRKV EKKSIGLEII 60 KQIDIYKYDP WDLPKNNNGE KELYFYCKRG RKYKNSVRPN RVTAGSGFWK ATGIDKPIYS 120 SNINGKCIGL KKSLVYYKGS AGKGTKTDWQ MHEFRLPAEK DKSEAETWTL CRILKRNVSN 180 RKLVPDLKAA TRKQRNDPVD ALSSKICTNH SSSDNSSQIY ISFSTTPQNS YSTIITENKH 240 QFIGQKTSGT SSQSTTAAAA ASNPSTPLDF NEWLEHGNWD ELKSIFELPF DPF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-47 | 30 | 182 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-47 | 30 | 182 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-47 | 30 | 182 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-47 | 30 | 182 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-47 | 30 | 182 | 22 | 174 | NAC domain-containing protein 19 |
3swm_B | 5e-47 | 30 | 182 | 22 | 174 | NAC domain-containing protein 19 |
3swm_C | 5e-47 | 30 | 182 | 22 | 174 | NAC domain-containing protein 19 |
3swm_D | 5e-47 | 30 | 182 | 22 | 174 | NAC domain-containing protein 19 |
3swp_A | 5e-47 | 30 | 182 | 22 | 174 | NAC domain-containing protein 19 |
3swp_B | 5e-47 | 30 | 182 | 22 | 174 | NAC domain-containing protein 19 |
3swp_C | 5e-47 | 30 | 182 | 22 | 174 | NAC domain-containing protein 19 |
3swp_D | 5e-47 | 30 | 182 | 22 | 174 | NAC domain-containing protein 19 |
4dul_A | 5e-47 | 30 | 182 | 19 | 171 | NAC domain-containing protein 19 |
4dul_B | 5e-47 | 30 | 182 | 19 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015065546.1 | 1e-150 | transcription factor JUNGBRUNNEN 1-like | ||||
Swissprot | Q9SK55 | 9e-81 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | M1BW99 | 1e-141 | M1BW99_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400054407 | 1e-142 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1697 | 24 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 1e-78 | NAC domain containing protein 42 |