PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00226.1_g00020.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Trihelix
Protein Properties Length: 323aa    MW: 37102.1 Da    PI: 8.9777
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00226.1_g00020.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix55.81.2e-171897272
                 trihelix  2 WtkqevlaLiearremeerlr.........rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72
                             Wt qe+++Liea++ ++er           rgk  + +W++v +++++ g+ rs++qC++kw+nl +++kk++e e + +
  Sme2.5_00226.1_g00020.1 18 WTVQETMVLIEAKKMDDERRMkrdgntsseRGKPGELRWKWVEDYCWRNGCLRSQNQCNDKWDNLMRDFKKVREYETRVS 97
                             *************955544441211121223569999*************************************999874 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.0271083IPR017877Myb-like domain
PfamPF138378.9E-1317112No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MDNQSGISML REYRKGNWTV QETMVLIEAK KMDDERRMKR DGNTSSERGK PGELRWKWVE  60
DYCWRNGCLR SQNQCNDKWD NLMRDFKKVR EYETRVSLPQ GGDQQIKSYW KLERTQRKEN  120
NLPTNMLPEI YEALLQVVDK RGQKVLVGAS PTFNPATTSL SPTLQQHQIP TLPLPSPPLL  180
PPPPPPNLPY TQPVAKVIIY WINVDIHVCV LEMCDSSDRD RSEHSDSPSK RRRKGEGSGG  240
NINNLQEVGS AIFKIAETIQ ACEEREETRH REMLKLHERR LQIEESKAQI NRQGINGLVD  300
SINRLANSIL SLAAANNQPP PPK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754416e-63HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010315652.11e-151trihelix transcription factor ASR3-like
TrEMBLK4B5951e-149K4B595_SOLLC; Uncharacterized protein
STRINGSolyc02g030460.2.11e-150(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48212236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.14e-56Trihelix family protein