PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00183.1_g00008.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 689aa    MW: 74866.1 Da    PI: 7.1911
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00183.1_g00008.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.84.5e-09272292526
                              --SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                              +C++f++ GtC++Gd C +aHg
  Sme2.5_00183.1_g00008.1 272 PCPDFRK-GTCQRGDACEYAHG 292
                              8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484034.04E-1644171IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.3E-1754178IPR020683Ankyrin repeat-containing domain
PfamPF127964.1E-971144IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.98275153IPR020683Ankyrin repeat-containing domain
SMARTSM002480.008575105IPR002110Ankyrin repeat
CDDcd002048.43E-1577172No hitNo description
SMARTSM002480.0024110142IPR002110Ankyrin repeat
PROSITE profilePS5008811.114110145IPR002110Ankyrin repeat
SMARTSM003561.6E-5267293IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-6272292IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-4272294IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.873272294IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-4300330IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.005302326IPR000571Zinc finger, CCCH-type
SMARTSM0035663302325IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 689 aa     Download sequence    Send to blast
MCSGSRSQVC STNFAMEAEI QKQKELVPDL SRLLELSASD DVINFQKAVE EEGRDINEVS  60
LWYARRVGVK KMGYEERTPL MVAAAFGSKQ VLSYILEKGC VDVNQACGSD KATALHCAIS  120
GGSAALLEVV KLLLDASANV NLVDANGKRA VDLISVQSCC LNSRRKILEH LLGGSSSDEV  180
IDLISPKKSE EQLLSTPAIS KFGGEKKEYP VDPSLPDIKN GIYGTDDFRM YIFKVKPCSR  240
AYSHDWTECP FVHPGENARR RDPSKYHYSC VPCPDFRKGT CQRGDACEYA HGIFECWLHP  300
AQYRTRMCKD ETNCNRRVCF FAHKPEELRP LYPSTGSAVL SPRSYSNGSS SFDITSITPL  360
ALGSSSVMIP PTSTPPMSPS AGASSVGGSL WPCQSSPATP TLQLPISRLK SAINARDVEL  420
GNGYNLMQDQ LMDDLSGLPS PSRWNSSLAK AAAFAASSNE RNGEFSRHGG LNPTDLDDIL  480
ANLDAKILSQ LQGLSLDAVS PQLHSPKGMQ MRQNMNQQRI TSYSSGQSSP SFRTSSSYGI  540
DPSGAAATAG LSSRAAAFVK RSQSFIDRSA AARLPNASAV PSNLSGWGSP DGKLDWGIQK  600
EELNKLRKSA SFGLRTGGSR FPPTSEASAS DSSVEPDVSR VQSPDSPSVI SRRLATMEDQ  660
QYRLNTSRGS ETMPTWVDQL YMEQEQIVH
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006350842.10.0PREDICTED: zinc finger CCCH domain-containing protein 66
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A3Q7H1T70.0A0A3Q7H1T7_SOLLC; Uncharacterized protein
STRINGSolyc06g082010.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25582245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein