PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_00179.1_g00014.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

NAC

Protein Properties

Length: 340aa MW: 39093.9 Da PI: 7.2332

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00179.1_g00014.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	171.2	3.3e-53	22	149	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lppGfrF Ptdeel+++yL+ kv + ++ i+evd++++ePw+Lp+ +k +e+ewyfFs rd+ky+tg r+nrat +gyWkat Sme2.5_00179.1_g00014.1 22 LPPGFRFYPTDEELITFYLASKVYNGTFCG-VQIAEVDLNRCEPWELPEVAKMGEREWYFFSLRDRKYPTGLRTNRATGAGYWKAT 106 79***********************877.45***********8888999*************************** PP NAM 87 gkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 gkd+ev++ +g+l+g+kktLvfykgrap+gekt+Wvmheyrl Sme2.5_00179.1_g00014.1 107 GKDREVYAGtNGALIGMKKTLVFYKGRAPRGEKTKWVMHEYRL 149 ***9878899*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.79E-62	15	170	IPR003441	NAC domain
PROSITE profile	PS51005	58.792	22	171	IPR003441	NAC domain
Pfam	PF02365	1.8E-27	23	149	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010014	Biological Process	meristem initiation
GO:0010199	Biological Process	organ boundary specification between lateral organs and the meristem
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MMLSMEEILC ELNREEMNEQ GLPPGFRFYP TDEELITFYL ASKVYNGTFC GVQIAEVDLN 60 RCEPWELPEV AKMGEREWYF FSLRDRKYPT GLRTNRATGA GYWKATGKDR EVYAGTNGAL 120 IGMKKTLVFY KGRAPRGEKT KWVMHEYRLD GHFSFRYSTK EEWVICRIHH RIGEKKNATY 180 EGYPTLKTWS SAAMNSPLTP NPKTPWQQAE SLHHHENDLI KSLFNNNLSQ TTLTNTLFPS 240 NNVTATATAF SSTKRYKDDK QDNHVDTNNI TCTTSRKNET QGCTFSSPLY YYNDFGMNVA 300 DNWSSSLSGM EEGMPCNYFN NVVMDNSPIK IAAQSWPLHP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-52	15	171	13	168	NAC domain-containing protein 19
3swm_B	1e-52	15	171	13	168	NAC domain-containing protein 19
3swm_C	1e-52	15	171	13	168	NAC domain-containing protein 19
3swm_D	1e-52	15	171	13	168	NAC domain-containing protein 19
3swp_A	1e-52	15	171	13	168	NAC domain-containing protein 19
3swp_B	1e-52	15	171	13	168	NAC domain-containing protein 19
3swp_C	1e-52	15	171	13	168	NAC domain-containing protein 19
3swp_D	1e-52	15	171	13	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269\|PubMed:12837947, ECO:0000269\|PubMed:17122068}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00241	DAP	Transfer from AT1G76420	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269\|PubMed:16854978}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ435159	0.0	FJ435159.1 Solanum tuberosum CUP-SHAPED COTYLEDON3 (CUC3) mRNA, complete cds.
GenBank	JF439374	0.0	JF439374.1 Solanum chacoense cup-shaped cotlyedon 3 (CUC3) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001275002.1	1e-173	CUP-SHAPED COTYLEDON3
Swissprot	Q9S851	1e-98	NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBL	F5C0G3	1e-175	F5C0G3_SOLCH; Cup-shaped cotlyedon 3
STRING	PGSC0003DMT400025690	1e-173	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76420.1	1e-100	NAC family protein

Publications ? help Back to Top
Chen C, et al. Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.). J. Exp. Bot., 2014. 65(17): p. 4943-58 [PMID:24962999] Gonçalves B, et al. A conserved role for CUP-SHAPED COTYLEDON genes during ovule development. Plant J., 2015. 83(4): p. 732-42 [PMID:26119568] Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis. Plant J., 2017. 90(3): p. 435-446 [PMID:28161901] Espinosa-Ruiz A, et al. TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana. Development, 2017. 144(9): p. 1619-1628 [PMID:28320734] Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549]