PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00159.1_g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | HSF | ||||||||
Protein Properties | Length: 213aa MW: 24620 Da PI: 10.0895 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 102.8 | 2.9e-32 | 2 | 86 | 9 | 102 |
HHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS HSF_DNA-bind 9 iledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 ++ed+++++++sw+++g++fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+k+++++ weF++++F+kgkk+ll Sme2.5_00159.1_g00006.1 2 LVEDPATDNVVSWNSDGSAFVVWQPAEFASDLLPTLFKHSNFSSFVRQLNTYGFRKITTSR---------WEFSNNKFRKGKKNLL 78 799*******************************************************999.........**************** PP XXXXXXXX CS HSF_DNA-bind 95 ekikrkks 102 ++i+rkk Sme2.5_00159.1_g00006.1 79 CEIRRKKA 86 *****985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 1.2E-39 | 2 | 84 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 2.99E-28 | 2 | 84 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 7.0E-32 | 2 | 84 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 6.4E-29 | 2 | 84 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 8.3E-9 | 33 | 45 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 34 | 58 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 8.3E-9 | 46 | 58 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MLVEDPATDN VVSWNSDGSA FVVWQPAEFA SDLLPTLFKH SNFSSFVRQL NTYGFRKITT 60 SRWEFSNNKF RKGKKNLLCE IRRKKAWTNK QQPNNNNNNG QSQNVINKKV NTEEDQRSSS 120 STSSSSEYIN LVDENKRLKM ENGILSSELS LMKNKCKELI GIVTIFAKNP EKEEEKKPML 180 FGVKLEVKEE MERKRKRVEL NEIASVFLSQ LCK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5w_B | 3e-19 | 2 | 84 | 11 | 104 | Putative transcription factor |
5d5x_B | 3e-19 | 2 | 84 | 11 | 104 | Putative transcription factor |
5d5x_E | 3e-19 | 2 | 84 | 11 | 104 | Putative transcription factor |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00305 | DAP | Transfer from AT2G41690 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 1e-109 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. | |||
GenBank | HG975516 | 1e-109 | HG975516.1 Solanum lycopersicum chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015072976.1 | 1e-120 | heat stress transcription factor B-3 | ||||
Swissprot | O22230 | 3e-57 | HSFB3_ARATH; Heat stress transcription factor B-3 | ||||
TrEMBL | A0A3Q7GSI4 | 1e-117 | A0A3Q7GSI4_SOLLC; Uncharacterized protein | ||||
STRING | Solyc04g016000.2.1 | 1e-118 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4423 | 22 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41690.1 | 5e-52 | heat shock transcription factor B3 |