PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00121.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | AP2 | ||||||||
Protein Properties | Length: 337aa MW: 38256.9 Da PI: 10.3631 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.5 | 1.8e-19 | 105 | 154 | 1 | 54 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkle 54 ++ykGVr++ +g+W++eIrd n ++r +lg+f+taeeAa a+++a+ +++ Sme2.5_00121.1_g00002.1 105 KKYKGVRQRT-WGKWASEIRDtK--N--KTRLWLGTFDTAEEAALAYDKAAIEIR 154 59*****999.**********33..3..4**********************9987 PP | |||||||
2 | AP2 | 61.6 | 1.8e-19 | 254 | 304 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr++k +g+W+AeIrd k++r +lg+f+ta eAa a+++a+ +++g+ Sme2.5_00121.1_g00002.1 254 KYRGVRRRK-WGKWAAEIRDtR----KKTRLWLGTFDTALEAALAYDKAAIEIRGA 304 8*****998.**********33....36*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.01E-27 | 105 | 154 | No hit | No description |
SMART | SM00380 | 1.5E-27 | 106 | 171 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.6E-13 | 106 | 155 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.51E-18 | 106 | 155 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.3E-26 | 106 | 154 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.888 | 106 | 163 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.6E-11 | 107 | 118 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.6E-11 | 129 | 145 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-33 | 254 | 317 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.036 | 254 | 311 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.48E-20 | 254 | 310 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 5.91E-30 | 254 | 309 | No hit | No description |
Pfam | PF00847 | 1.7E-14 | 254 | 303 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-28 | 254 | 309 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MASKDELKEN KVVEKPSEIE RVEKSTNQVG ESSVVLPRVV RIYMPDSDAT DSSGDEEEKL 60 QGEKSNRHER TCIKEIIIEN GKTRVISKKT SKEKKDIKLL QENVKKYKGV RQRTWGKWAS 120 EIRDTKNKTR LWLGTFDTAE EAALAYDKAA IEIRALVSKE ELQGKEGVKK GSTIDVVEKS 180 SNQAGEISQV FPRLVCIHAP DHDTTDSSSD EEKSKGHGRT CVKEIIIKNG KTKVISKKSK 240 EKKDLNLMHE DVNKYRGVRR RKWGKWAAEI RDTRKKTRLW LGTFDTALEA ALAYDKAAIE 300 IRGANALTNI LKPPPKKNNP IKINFIVPPL KRKKADR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-18 | 106 | 310 | 13 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 0.0 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. | |||
GenBank | HG975513 | 0.0 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015064279.1 | 0.0 | ethylene-responsive transcription factor CRF2-like isoform X1 | ||||
Refseq | XP_015064286.1 | 0.0 | ethylene-responsive transcription factor CRF2-like isoform X1 | ||||
Refseq | XP_015064295.1 | 0.0 | ethylene-responsive transcription factor CRF2-like isoform X2 | ||||
Refseq | XP_015064302.1 | 0.0 | ethylene-responsive transcription factor CRF2-like isoform X2 | ||||
Swissprot | Q9SUE3 | 4e-26 | CRF4_ARATH; Ethylene-responsive transcription factor CRF4 | ||||
TrEMBL | A0A2G2XP49 | 0.0 | A0A2G2XP49_CAPBA; Uncharacterized protein | ||||
TrEMBL | M1C2N1 | 0.0 | M1C2N1_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400058442 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11140.1 | 3e-17 | cytokinin response factor 1 |
Publications ? help Back to Top | |||
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