PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00100.1_g00012.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 595aa    MW: 64889.9 Da    PI: 7.0324
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00100.1_g00012.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.24.7e-30242299260
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                              dDgynWrKYGqK vkgsefprsYY+Ct+++C+vkk  e+s  ++++ ei+Y+g+H+h+k
  Sme2.5_00100.1_g00012.1 242 DDGYNWRKYGQKLVKGSEFPRSYYKCTYPNCEVKKIFEQSP-EGQIREIVYKGSHDHPK 299
                              8****************************************.***************85 PP
2WRKY105.62.6e-33417475159
                              ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  Sme2.5_00100.1_g00012.1 417 LDDGYKWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 475
                              59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-25232300IPR003657WRKY domain
PROSITE profilePS5081121.494236300IPR003657WRKY domain
SuperFamilySSF1182908.11E-24237300IPR003657WRKY domain
SMARTSM007741.6E-31241299IPR003657WRKY domain
PfamPF031068.5E-23242298IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.1E-37402477IPR003657WRKY domain
SuperFamilySSF1182902.75E-29409477IPR003657WRKY domain
PROSITE profilePS5081138.595412477IPR003657WRKY domain
SMARTSM007749.0E-39417476IPR003657WRKY domain
PfamPF031065.9E-26418475IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MEDTHSQQQQ DHHSSSEQLR DGETSSGGLR HNSAGSNGGA KYKLMTPAML PISRSACITI  60
PPGLSPSSFL ESPVLLSNIK AEPSPTTGSF SKFQTVQGSG GAAAFLLTRG YSSGNTYIEG  120
KASCFEFKCA GGSSSTSGSL ATEHVITTVL NQQQNEPLKE VQDQSHPQLL VPSSPAKHEM  180
EASKEPSISA PINVDASSKE ESLYEPINVD AMNSRGQSNA SMQGSHVDHR DVSSVTSERS  240
SDDGYNWRKY GQKLVKGSEF PRSYYKCTYP NCEVKKIFEQ SPEGQIREIV YKGSHDHPKP  300
QLSRRFSPGA LMSIQEDKCE NEACFRGQEV YVEDKFNTNV QTSKTEPSST PVSPQQADTD  360
GLEGAGLQMH GTSDDMDEDD QFAKRRKMDG GMDITPVIKP IREPRVVVQT VSEVDILDDG  420
YKWRKYGQKV VRGNPNPRSY YKCTNAGCPV RKHVERASHD PKAVITTYEG KHNHDVPAAR  480
NNNHEMTGSS PVTGCSRIRP GETNSLSLDL GVGTGYRPDN RNNGQLHTIH SQGVSRSGMM  540
LVQPAAVAAR YGIIDSGLSR FGAIDNRVQG PSFETLRLQP STQSLQNYGK ILLGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-37242478878Probable WRKY transcription factor 4
2lex_A6e-37242478878Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB7111290.0AB711129.1 Solanum tuberosum StWRKY17 mRNA for transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015082104.10.0probable WRKY transcription factor 20
TrEMBLM1C0Z40.0M1C0Z4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000574090.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40252344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.21e-147WRKY family protein