PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00076.1_g00018.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 307aa    MW: 34528.1 Da    PI: 8.8378
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00076.1_g00018.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.73.2e-161131911397
                              TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                       B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                                 l++p  f++ ++g+   +   +led+  rsW+v +  +k+++ y++ ++W +Fv +n+L+ gDf++F++ g+s+f  +vk+ 
  Sme2.5_00076.1_g00018.1 113 YPKLRIPPAFLKFFNGD--IPSICMLEDLAARSWKVIV--EKNDCNYFFMENWPDFVLENKLEFGDFLTFSYAGNSKF--YVKIN 191
                              45699******988766..45579**************..**********************************9999..88885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-1796194IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.65E-2196194IPR015300DNA-binding pseudobarrel domain
CDDcd100171.59E-15101190No hitNo description
SMARTSM010191.1E-11103194IPR003340B3 DNA binding domain
PfamPF023623.0E-14115191IPR003340B3 DNA binding domain
PROSITE profilePS5086311.801116194IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MPSLSSSLVT GGYSAATVRL CPCQLPQFPF SCLILFIAHS LPFSSHPTFV KPLLSSFHPK  60
SSTLLQISQT SGVGKRQRKK KKVNNKMVTP VEHASIPDDL PEFFKIFHPE ICYPKLRIPP  120
AFLKFFNGDI PSICMLEDLA ARSWKVIVEK NDCNYFFMEN WPDFVLENKL EFGDFLTFSY  180
AGNSKFYVKI NGKNGSLKQD VTAVKELALL PWVGENAQGK SIVVRPADQI VNRSGYLAAS  240
ITSFEIVIKA SHLRRARLEM CHQEHFPSIC FPKLDSFSIC SSQPGIDDMI SNCNPRRNTE  300
LEVRTAL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754453e-80HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015077668.11e-102B3 domain-containing protein REM5-like
RefseqXP_015077669.11e-102B3 domain-containing protein REM5-like
TrEMBLM1A5L91e-95M1A5L9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000151912e-96(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA126331320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.13e-16B3 family protein