PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00076.1_g00006.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TALE
Protein Properties Length: 747aa    MW: 83562.1 Da    PI: 8.801
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00076.1_g00006.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.62.5e-094614981954
                              HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                 Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                              Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  Sme2.5_00076.1_g00006.1 461 FEHflHPYPKDSDKIMLAKQTGLTRSQVSNWFINARVR 498
                              554459******************************88 PP
2BELL121.24.3e-39325396172
                     BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                              +rqelq+kkakLl++leeV++rY+qy++q+q+++ssFe+vag gsak+Yt+lAl+aiS++FrcLkdai+eqi
  Sme2.5_00076.1_g00006.1 325 QRQELQMKKAKLLTMLEEVEQRYRQYHHQMQIIVSSFEQVAGSGSAKSYTQLALHAISKQFRCLKDAITEQI 396
                              69*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.6E-57248394IPR006563POX domain
PfamPF075263.3E-48253393IPR006563POX domain
PROSITE profilePS5007112.05439502IPR001356Homeobox domain
SMARTSM003894.2E-10442506IPR001356Homeobox domain
CDDcd000865.85E-12442503No hitNo description
SuperFamilySSF466895.56E-17443508IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.6E-29445508IPR009057Homeodomain-like
PfamPF059203.0E-18459498IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 747 aa     Download sequence    Send to blast
MSMQREKNRD HSDKKATSQS LESYHPKIDT SDKKEENKEE KRRRDFGVRI YLAVMYYQGT  60
SDNNIVQGDH HGNNNNIQTL YLMNPNNYMQ GYASTDTQQQ QQLLFLNSSP TSNNAPNQAN  120
IPHAPLQQQH FVGVPLPAVS LHDQINHHGL IQRMWNNQSG SHHHDQVIVP SSTVVSAASC  180
GGTTTDLASQ LAFQRPIVVS PTQQHRQQQQ GGLSLSLSPQ QQKQISFNNN ISSSPRTNNV  240
TIRGTLEGSS SNMVLGSKYL KAAQELLDEV VNIVGRKNFK GDDQKKENSM NKESMPLAGD  300
VNTSSGGESS SRQKNEVAVE LTTSQRQELQ MKKAKLLTML EEVEQRYRQY HHQMQIIVSS  360
FEQVAGSGSA KSYTQLALHA ISKQFRCLKD AITEQIKSTS KSLGEEEGLG GKIEGSRLKF  420
VDHHLRQQRA LQQLGMMQPN AWRPQRGLPE RAVSVLRAWL FEHFLHPYPK DSDKIMLAKQ  480
TGLTRSQVSN WFINARVRLW KPMVEEMYLE EVKNQEQNST TSQDNKNKET NMVSKSSGPN  540
EEIKQPIITS SLLQDGTTTT QTEISTSTIS TSPTAGASLQ AQHAHNFSFL GSFNMENNTT  600
TVDHIENNAK KPRNDMHKFS PSSILSSVDM EAKARESSNK GFNNSPLMAA YAMGDFGRFD  660
PHDQQMTANF HGNNGVSLTL GLPPSENLAM PVSQQNYLSN QNIELGSRPE MGSHFTRMGY  720
ENIDFQSGNK RFPTQLLPDF VTGNLGT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A6e-16448506563Homeobox protein Meis2
3k2a_B6e-16448506563Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4066970.0AF406697.1 Solanum tuberosum BEL1-related homeotic protein 5 (Bel5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001274921.10.0BEL1-related homeotic protein 5
TrEMBLB2ZTC80.0B2ZTC8_SOLPL; BEL5 protein
STRINGSolyc06g074120.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14782467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.34e-93BEL1-like homeodomain 1