PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00044.1_g00021.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GATA
Protein Properties Length: 336aa    MW: 36931.4 Da    PI: 6.417
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00044.1_g00021.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.51.5e-17234267134
                     GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                              C +C  tkTp+WR gp g+ktLCnaCG++y+k +
  Sme2.5_00044.1_g00021.1 234 CLHCEITKTPQWRAGPMGPKTLCNACGVRYKKGR 267
                              99******************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.3E-672321IPR016679Transcription factor, GATA, plant
SMARTSM004013.8E-17228278IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.49228264IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.108.2E-15232267IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577162.33E-15232291No hitNo description
CDDcd002021.30E-13233280No hitNo description
PROSITE patternPS003440234259IPR000679Zinc finger, GATA-type
PfamPF003202.4E-15234268IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MGSEFVDEID CSSFFEHMED LVEFSPENEG SCVDAVDCKD FPSIWNDPLP DPNPLFSSNS  60
ASDFSAELPV PYEDVVQLEW LSTFVEDSFS CGGLTLGKEH CPVKQEPSDS KFLISSPVSV  120
LESSSSSSSS SSSSSGPGKT LPPLSPCHRG PHRARSKRPR PTTFNPRPVN HLMLPTSVIP  180
QQFVAPGVNS SASENFAESP MKKKKKIKFS LPQPPTETNQ DNNHQPAPQA VRKCLHCEIT  240
KTPQWRAGPM GPKTLCNACG VRYKKGRLYP EYRPAASPTF VPSLHSNSHK KVLEMRSNTF  300
REEDMPRQAR PSIIGQAENN TTATTTPTAQ LDVNPE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156160KRPRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755160.0HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006350222.10.0PREDICTED: GATA transcription factor 8-like
RefseqXP_006350223.10.0PREDICTED: GATA transcription factor 8-like
TrEMBLM1CLQ90.0M1CLQ9_SOLTU; GATA transcription factor
STRINGPGSC0003DMT4000701340.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23452358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.25e-38GATA family protein