PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00036.1_g00024.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 422aa    MW: 47389.1 Da    PI: 8.8694
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00036.1_g00024.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.00016382221
                             EETTTTEEESSHHHHHHHHH CS
                  zf-C2H2  2 kCpdCgksFsrksnLkrHir 21
                             +C+ CgksF ++  L  H++
  Sme2.5_00036.1_g00024.1 63 VCKECGKSFQSWKALFGHMK 82
                             6******************7 PP
2zf-C2H210.70.0016325347123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++Cp+C k F++   L  H r+H
  Sme2.5_00036.1_g00024.1 325 HECPICFKIFPSGQALGGHKRSH 347
                              79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.25E-56186No hitNo description
PROSITE profilePS5015710.7416289IPR007087Zinc finger, C2H2
SMARTSM003550.00786284IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.8E-46385IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.9E-86486IPR007087Zinc finger, C2H2
PROSITE patternPS0002806484IPR007087Zinc finger, C2H2
SuperFamilySSF576674.97E-6269291No hitNo description
PROSITE profilePS5015710.221269296IPR007087Zinc finger, C2H2
SMARTSM003550.5269291IPR015880Zinc finger, C2H2-like
PfamPF139121.8E-10269292IPR007087Zinc finger, C2H2
PROSITE patternPS000280271291IPR007087Zinc finger, C2H2
SuperFamilySSF576674.97E-6320347No hitNo description
SMARTSM003550.19325347IPR015880Zinc finger, C2H2-like
PfamPF139122.3E-10325348IPR007087Zinc finger, C2H2
PROSITE profilePS501578.787325347IPR007087Zinc finger, C2H2
PROSITE patternPS000280327347IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MRSHMVNTTD GETSRKKLPA LIISSTNNAN LDMGSQSVNY GLRENPKKTL KFAEDLDTSL  60
PKVCKECGKS FQSWKALFGH MKCHSSSSQE EDSWNSASES DTAAATTVPP NKKKRSSRRR  120
MMKRYMAPTT SSSLTPVANA SSPCVSEIEH EQEEIAMSLI LLSRDVGNWV GQNHVIDQCS  180
DNNSQFLQSR LSNTKSELIR KVKNGKTEQG ESSKGQKRDK SELPILGDEK KKKIKMDYEN  240
RVQFSPNKTV KGSGLVISDP KENSTKIMFD CTTCNRRFHS YQALGGHRAS HKNAKGESCT  300
TIDIKNCSNE SENNEFKQNF GSKKHECPIC FKIFPSGQAL GGHKRSHLIA ESRKNINNNN  360
QAVQVQKPIP EIRNFLDLNL PAPVEEEDNI LDSSSTEQHI EFQQWWIDST HKHEQLLGLL  420
SN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754426e-79HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006345158.10.0PREDICTED: zinc finger protein ZAT1-like
TrEMBLA0A2G3CZ540.0A0A2G3CZ54_CAPCH; Uncharacterized protein
STRINGPGSC0003DMT4000631110.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44812241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.17e-28C2H2-like zinc finger protein