PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00027.1_g00030.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 418aa    MW: 47239.6 Da    PI: 5.557
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00027.1_g00030.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.73.3e-12204229126
                              --S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                              y   +C+++ +tG+C yGd+CkF+H+
  Sme2.5_00027.1_g00030.1 204 YQPDICKDYKETGYCGYGDSCKFMHD 229
                              66789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.75E-9202234IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7203230IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878203231IPR000571Zinc finger, CCCH-type
PfamPF006426.1E-10204229IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-12204234IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.101.9E-10273311IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578509.09E-11281314No hitNo description
PROSITE profilePS500898.535282305IPR001841Zinc finger, RING-type
CDDcd001621.42E-6282312No hitNo description
PfamPF134451.3E-6282307IPR027370RING-type zinc-finger, LisH dimerisation motif
SMARTSM001845.3E-4282343IPR001841Zinc finger, RING-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MENSNTPACD SNAAKAEDEQ PPTAPSSSTP VCNFFKKPSK GKNIRKRPTV EEGENEDAEG  60
DSSVIYTKKK PAVNSKLHFS TESSKSNKDT ESNVDSKESR FHFESSKEIQ VQNDSRATAT  120
LETETDFSND ARAIRERALK QAEAALKGKS KTGGDEKLYK GINQYTDYKA GLRREHTIAS  180
EKAGGAHGPL RASAHIRVSA RFDYQPDICK DYKETGYCGY GDSCKFMHDR GDYKSGWQME  240
KEWEEAEKER KRKLAMGMLD EDDEDAEKSD EDDDDDALPF ACFICREPFV DPVVTKCKHY  300
FCEHCALKRL KYAREWRLKE NDGSSASSLF QDVIEVDLAL PLCYLIRQAF SVESKSLLFA  360
AAFQSHQQRA KEFWLIFPFL EWVNFFFLGF TKLPLSIALS SSPRMHDGSS SIQILIDA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M4e-543131114291RING finger protein 113A
5z58_M4e-543131114291RING finger protein 113A
6ff4_t4e-543131114291RING finger protein 113A
6ff7_t4e-543131114291RING finger protein 113A
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016560307.10.0PREDICTED: zinc finger CCCH domain-containing protein 1
RefseqXP_016560308.10.0PREDICTED: zinc finger CCCH domain-containing protein 1
SwissprotQ8GX841e-133C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A2G3D6Q10.0A0A2G3D6Q1_CAPCH; Zinc finger CCCH domain-containing protein 1
STRINGPGSC0003DMT4000355220.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44032337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-124C3H family protein