PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_00024.1_g00007.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

LSD

Protein Properties

Length: 419aa MW: 45766.4 Da PI: 4.5665

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00024.1_g00007.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	45.2	1.5e-14	330	354	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCr lLsYP GA+sV+C++C+tV Sme2.5_00024.1_g00007.1 330 CGGCRQLLSYPQGAKSVKCSCCQTV 354 ************************9 PP
2	zf-LSD1	45.4	1.3e-14	368	392	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC +lL+YP+GApsVRC++C +V Sme2.5_00024.1_g00007.1 368 CGGCAVLLMYPYGAPSVRCSSCRHV 392 ************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	1.0E-17	327	357	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	3.5E-12	330	354	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	2.1E-10	365	394	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	4.6E-12	368	392	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009617	Biological Process	response to bacterium

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence Send to blast
MEEKLISIDN HKVDEEEDEG PPPGFDSLVV PSQNINALMD EDDDDEGPPP GWPSIPQQNN 60 QKLLQTTDVE MESKEHEAED DEDGPPPGWN TIIPQKKLPS SPPTIKAVTC DLEMKKKEEV 120 VEDKDNGPPP KWKLTPKLPP LQTSTPPSGT QGASLEDIEM EKKEVVVEDE DNGPPPGWQL 180 TPQLPLQQTS TPPLGTQGAP FADLQCDFIF IDQYGKGNGM PNVFVLIETA DIEMVSKQDC 240 DVEKEGHPVG SESIPMTGHS SPPTLPPQSS SSAASSEMEM GSKQEGTKNE EVKRQIEKQP 300 MSHLRQMKPV VPQSSLHAAT VSAEMGQMVC GGCRQLLSYP QGAKSVKCSC CQTVNLVLEA 360 HDVGQVKCGG CAVLLMYPYG APSVRCSSCR HVTKIGAHNR RPPQSVQQPR RRHPSYQVH

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence Send to blast

MEEKLISIDN HKVDEEEDEG PPPGFDSLVV PSQNINALMD EDDDDEGPPP GWPSIPQQNN  60
QKLLQTTDVE MESKEHEAED DEDGPPPGWN TIIPQKKLPS SPPTIKAVTC DLEMKKKEEV  120
VEDKDNGPPP KWKLTPKLPP LQTSTPPSGT QGASLEDIEM EKKEVVVEDE DNGPPPGWQL  180
TPQLPLQQTS TPPLGTQGAP FADLQCDFIF IDQYGKGNGM PNVFVLIETA DIEMVSKQDC  240
DVEKEGHPVG SESIPMTGHS SPPTLPPQSS SSAASSEMEM GSKQEGTKNE EVKRQIEKQP  300
MSHLRQMKPV VPQSSLHAAT VSAEMGQMVC GGCRQLLSYP QGAKSVKCSC CQTVNLVLEA  360
HDVGQVKCGG CAVLLMYPYG APSVRCSSCR HVTKIGAHNR RPPQSVQQPR RRHPSYQVH

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	6e-48	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015063652.1	0.0	uncharacterized protein LOC107008945 isoform X1
TrEMBL	A0A0V0I4B5	0.0	A0A0V0I4B5_SOLCH; Putative ovule protein
TrEMBL	A0A0V0IMR9	0.0	A0A0V0IMR9_SOLCH; Putative ovule protein
STRING	PGSC0003DMT400076422	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11642	22	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	2e-31	lsd one like 2