PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00015.1_g00011.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WOX
Protein Properties Length: 280aa    MW: 31615.1 Da    PI: 7.0989
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00015.1_g00011.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.85e-203090357
                             --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                 Homeobox  3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                             +R+t+t++q+++L++l+++   r p+ae+++++++kl    +++ ++V++WFqN++a+e++
  Sme2.5_00015.1_g00011.1 30 SRWTPTSDQIRILKDLYYNngVRSPTAEQIQRISAKLrqygKIEGKNVFYWFQNHKARERQ 90
                             8*****************8678*************************************97 PP
2Wus_type_Homeobox113.98.3e-372892265
        Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                             +++RWtPt++Qi+iL++ly+ +G+r+P++e+iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+
  Sme2.5_00015.1_g00011.1 28 SSSRWTPTSDQIRILKDLYYnNGVRSPTAEQIQRISAKLRQYGKIEGKNVFYWFQNHKARERQKK 92
                             789***************9779*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.71E-111592IPR009057Homeodomain-like
PROSITE profilePS5007110.5922591IPR001356Homeobox domain
SMARTSM003891.7E-62795IPR001356Homeobox domain
PfamPF000461.3E-173090IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.3E-83090IPR009057Homeodomain-like
CDDcd000861.37E-73192No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MEHQHLTNNI EDGGVSSKSN NNFMCRQSSS RWTPTSDQIR ILKDLYYNNG VRSPTAEQIQ  60
RISAKLRQYG KIEGKNVFYW FQNHKARERQ KKRLIAAASA TDNNINNNNI SPMQMIPHLW  120
RSPDDHHKYN NTITNPGVHC PSPSSQGVLA VGQTGNYGYG ALAMEKSFRE CSISPPGGSS  180
MNHQNLTWVG VDPYNMSATN SPAAYPFFEK TNNKDYEETL EEEIYQRGNI SALETLPLFP  240
MHEDNIISNF CIKHHESSPG CYPSDNNNLA ALELTLNSFP
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). May induce shoot stem cells activity in order to maintain the stem cell identity (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5383290.0AJ538329.1 Lycopersicon esculentum mRNA for wuschel protein (wus gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006340731.11e-164PREDICTED: protein WUSCHEL
SwissprotQ84VT71e-162WUS_SOLLC; Protein WUSCHEL
TrEMBLM0ZVP91e-162M0ZVP9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000091571e-163(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA76042331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.19e-44WOX family protein
Publications ? help Back to Top
  1. Reinhardt D,Frenz M,Mandel T,Kuhlemeier C
    Microsurgical and laser ablation analysis of interactions between the zones and layers of the tomato shoot apical meristem.
    Development, 2003. 130(17): p. 4073-83
    [PMID:12874128]