PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00013.1_g00025.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 360aa    MW: 40786.8 Da    PI: 6.0697
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00013.1_g00025.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.47.1e-29133193259
                              --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                              dDgy+WrKYGqK++ g+++prsYYrCt++   +C+++k+v+rs++dp+v++itY+g+Hn++
  Sme2.5_00013.1_g00025.1 133 DDGYSWRKYGQKDILGAKYPRSYYRCTYRhmqNCWATKQVQRSDDDPTVFDITYRGSHNCH 193
                              8**************************99899***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.8E-28126194IPR003657WRKY domain
SuperFamilySSF1182903.66E-25131194IPR003657WRKY domain
SMARTSM007743.5E-39132194IPR003657WRKY domain
PROSITE profilePS5081121.953133191IPR003657WRKY domain
PfamPF031061.2E-26133193IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MDCPSNWEYK TVINELTQGI EHTKQLREHF HSAGSTFENQ ELLLQKILSS YEQSLLILKW  60
SGSTVQSPQP LPPTCGAIES SVSVDGSPKS DDMKRSFQDH HELINISKKR KSQPTWTEQV  120
KVSAESGFEG PTDDGYSWRK YGQKDILGAK YPRSYYRCTY RHMQNCWATK QVQRSDDDPT  180
VFDITYRGSH NCHHATYSAL QPTSPEKPEF KNQAVYQSGQ YSNQVLMNLR ANLRVNTNDL  240
DKNETAACHF TFPTTFSSSG LTDDNRHFQI SHVDENLIGN GYSPSFISPT TPESNYFSIS  300
SSSQMNGYGM VHNLHHSESD LTDIFSANTS TTSSPIVGDF SLDHLELDPN FPFDNPRFFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-18133192968OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006352253.10.0PREDICTED: probable WRKY transcription factor 53
TrEMBLM1A5580.0M1A558_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000149490.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18432467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.15e-63WRKY family protein