PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00013.1_g00024.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 511aa    MW: 57347.2 Da    PI: 7.0483
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00013.1_g00024.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY81.11.1e-25215273259
                              --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                              dDgy+W KYGqK + g++fpr+YYrCt+  +C++kkk++r++ dp v+eitY+g H+++
  Sme2.5_00013.1_g00024.1 215 DDGYSWIKYGQKCILGAKFPRGYYRCTFFkNCWAKKKIQRTDVDPIVFEITYKGYHTCQ 273
                              8**************************987***************************97 PP
2WRKY70.72e-22320380259
                              --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                              d gy+WrKYG K++ g+e+ rs+YrC ++   +C+++k+v+ s++dp+++ei+Y+g+H+++
  Sme2.5_00013.1_g00024.1 320 DGGYSWRKYGEKDILGAEYHRSFYRCKYHnmqNCRATKEVQMSDDDPTAFEIVYKGSHTCH 380
                              569***********************9988889**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081119.807209270IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.5E-24210273IPR003657WRKY domain
SuperFamilySSF1182902.88E-22213274IPR003657WRKY domain
SMARTSM007747.5E-31214274IPR003657WRKY domain
PfamPF031068.5E-23215273IPR003657WRKY domain
PROSITE profilePS5081117.798314382IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.9E-23316380IPR003657WRKY domain
SuperFamilySSF1182908.76E-21318381IPR003657WRKY domain
SMARTSM007746.2E-28319381IPR003657WRKY domain
PfamPF031061.4E-21322380IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MDGVFTWDYY SLINELTQGM EHTKQLRTYL SSVASTSGAI PELLLQKILS SYEQSLIILK  60
WSGSTVQSLP AAGAIESMVS GDGNPRSDEK ERSYNDHQKI IHISKKRGKP PFSPCCPNTM  120
CDIIVDIVTI LDDGTQILKV FHLKDRLSGK PHFKVCFIPL NTEFALQVFS FDLAQFESFG  180
LQGNVTWFLM GVSRKSQFTA QLPVRTQSGY EGPIDDGYSW IKYGQKCILG AKFPRGYYRC  240
TFFKNCWAKK KIQRTDVDPI VFEITYKGYH TCQYRQVTNS THQATSLEKQ ANHPSLIDGS  300
YSPSFVSAEG GFDSLEGPID GGYSWRKYGE KDILGAEYHR SFYRCKYHNM QNCRATKEVQ  360
MSDDDPTAFE IVYKGSHTCH LATNSAQEAT SSEKEASHHS LIVGGYSPSF VSPKTPESNH  420
FSVSSRQMNG LGIVHNLDHS ESYLSDIGIF CELRHSDSDR TDTFSGNTST TSSSIGGQFA  480
IVSGARHDFP FWTKRHSETE ANTPKKNDKD E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-12319379868OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015166338.13e-72PREDICTED: probable WRKY transcription factor 53 isoform X1
RefseqXP_015166339.13e-72PREDICTED: probable WRKY transcription factor 53 isoform X2
TrEMBLM1A5606e-71M1A560_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000149511e-71(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.21e-26WRKY family protein